head 1.5; access; symbols pkgsrc-2023Q4:1.5.0.14 pkgsrc-2023Q4-base:1.5 pkgsrc-2023Q3:1.5.0.12 pkgsrc-2023Q3-base:1.5 pkgsrc-2023Q2:1.5.0.10 pkgsrc-2023Q2-base:1.5 pkgsrc-2023Q1:1.5.0.8 pkgsrc-2023Q1-base:1.5 pkgsrc-2022Q4:1.5.0.6 pkgsrc-2022Q4-base:1.5 pkgsrc-2022Q3:1.5.0.4 pkgsrc-2022Q3-base:1.5 pkgsrc-2022Q2:1.5.0.2 pkgsrc-2022Q2-base:1.5 pkgsrc-2022Q1:1.4.0.2 pkgsrc-2022Q1-base:1.4 pkgsrc-2021Q4:1.3.0.2 pkgsrc-2021Q4-base:1.3 pkgsrc-2021Q3:1.1.0.24 pkgsrc-2021Q3-base:1.1 pkgsrc-2021Q2:1.1.0.22 pkgsrc-2021Q2-base:1.1 pkgsrc-2021Q1:1.1.0.20 pkgsrc-2021Q1-base:1.1 pkgsrc-2020Q4:1.1.0.18 pkgsrc-2020Q4-base:1.1 pkgsrc-2020Q3:1.1.0.16 pkgsrc-2020Q3-base:1.1 pkgsrc-2020Q2:1.1.0.14 pkgsrc-2020Q2-base:1.1 pkgsrc-2020Q1:1.1.0.10 pkgsrc-2020Q1-base:1.1 pkgsrc-2019Q4:1.1.0.12 pkgsrc-2019Q4-base:1.1 pkgsrc-2019Q3:1.1.0.8 pkgsrc-2019Q3-base:1.1 pkgsrc-2019Q2:1.1.0.6 pkgsrc-2019Q2-base:1.1 pkgsrc-2019Q1:1.1.0.4 pkgsrc-2019Q1-base:1.1 pkgsrc-2018Q4:1.1.0.2 pkgsrc-2018Q4-base:1.1; locks; strict; comment @# @; 1.5 date 2022.04.25.14.34.06; author tnn; state Exp; branches; next 1.4; commitid nXA5Zj47B9lwFABD; 1.4 date 2022.03.17.23.49.08; author bacon; state Exp; branches; next 1.3; commitid oWjTYz3E37mjYCwD; 1.3 date 2021.10.26.10.03.44; author nia; state Exp; branches; next 1.2; commitid R64ULQLy8JYkZieD; 1.2 date 2021.10.07.13.19.43; author nia; state Exp; branches; next 1.1; commitid CQ422EVgQgYxGSbD; 1.1 date 2018.12.22.21.52.06; author bacon; state Exp; branches; next ; commitid goNC4TSVvkt8jQ4B; desc @@ 1.5 log @stacks: avoid ambiguous math functions @ text @$NetBSD: distinfo,v 1.4 2022/03/17 23:49:08 bacon Exp $ BLAKE2s (stacks-2.60.tar.gz) = 10dc694d464172fdfadec6dadd973d5e44bba83150d564e964479166f87192a5 SHA512 (stacks-2.60.tar.gz) = 9bb2bf730ab5a35cb732107b989ca5068c1e2a8d7a647423d62195ab2049f61409e5ad5b9f16444c10791196f322d677aa7f0e0e73bcfccb9b7c4c00ec40ad32 Size (stacks-2.60.tar.gz) = 12135281 bytes SHA1 (patch-src_Hwp.cc) = 15b1872fd0199a13020cecf7ff34478cf83007fd SHA1 (patch-src_PopSum.cc) = fbf56bbdb3f8e0cc146ca19c75c910fbc00ae36b SHA1 (patch-src_Vcf.cc) = 26f04decced076cd189fe3162c4641809d070060 SHA1 (patch-src_kmers.cc) = 8fbe6c7be1d35f4dc17f2f250538c9b5f136e524 SHA1 (patch-src_smoothing__utils.h) = be331ef1d89998b946cf923d95f9eda676a245ab SHA1 (patch-src_utils.cc) = 3474a1d0dcc395892e362c877df0daa33050b500 @ 1.4 log @biology/stacks: Update to 2.60 Numerous bug fixes and enhancements since 2.2 Unbreak build on Darwin @ text @d1 1 a1 1 $NetBSD$ d6 6 @ 1.3 log @biology: Replace RMD160 checksums with BLAKE2s checksums All checksums have been double-checked against existing RMD160 and SHA512 hashes @ text @d1 1 a1 1 $NetBSD: distinfo,v 1.2 2021/10/07 13:19:43 nia Exp $ d3 3 a5 3 BLAKE2s (stacks-2.2.tar.gz) = d5b6c2353e4888abfe9a721552718bd76d5705cd94209f7af0fafac37bd70bf3 SHA512 (stacks-2.2.tar.gz) = f1cffd12313fed1c171af46f9fb501373b43d57cd3004edae1034074f43169d43398743cf625ffa21be412c808ba1168513a33c63377ee13dd056406fa222095 Size (stacks-2.2.tar.gz) = 10822973 bytes @ 1.2 log @biology: Remove SHA1 hashes for distfiles @ text @d1 1 a1 1 $NetBSD: distinfo,v 1.1 2018/12/22 21:52:06 bacon Exp $ d3 1 a3 1 RMD160 (stacks-2.2.tar.gz) = 2f5097c668d9662dbbec705fe3bf00216c11d388 @ 1.1 log @biology/stacks: import stacks-2.2 Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography. @ text @d1 1 a1 1 $NetBSD$ a2 1 SHA1 (stacks-2.2.tar.gz) = ee99798378b906f356c23da0073d0361440263bf @