head	1.1;
access;
symbols
	pkgsrc-2024Q1:1.1.0.48
	pkgsrc-2024Q1-base:1.1
	pkgsrc-2023Q4:1.1.0.46
	pkgsrc-2023Q4-base:1.1
	pkgsrc-2023Q3:1.1.0.44
	pkgsrc-2023Q3-base:1.1
	pkgsrc-2023Q2:1.1.0.42
	pkgsrc-2023Q2-base:1.1
	pkgsrc-2023Q1:1.1.0.40
	pkgsrc-2023Q1-base:1.1
	pkgsrc-2022Q4:1.1.0.38
	pkgsrc-2022Q4-base:1.1
	pkgsrc-2022Q3:1.1.0.36
	pkgsrc-2022Q3-base:1.1
	pkgsrc-2022Q2:1.1.0.34
	pkgsrc-2022Q2-base:1.1
	pkgsrc-2022Q1:1.1.0.32
	pkgsrc-2022Q1-base:1.1
	pkgsrc-2021Q4:1.1.0.30
	pkgsrc-2021Q4-base:1.1
	pkgsrc-2021Q3:1.1.0.28
	pkgsrc-2021Q3-base:1.1
	pkgsrc-2021Q2:1.1.0.26
	pkgsrc-2021Q2-base:1.1
	pkgsrc-2021Q1:1.1.0.24
	pkgsrc-2021Q1-base:1.1
	pkgsrc-2020Q4:1.1.0.22
	pkgsrc-2020Q4-base:1.1
	pkgsrc-2020Q3:1.1.0.20
	pkgsrc-2020Q3-base:1.1
	pkgsrc-2020Q2:1.1.0.18
	pkgsrc-2020Q2-base:1.1
	pkgsrc-2020Q1:1.1.0.14
	pkgsrc-2020Q1-base:1.1
	pkgsrc-2019Q4:1.1.0.16
	pkgsrc-2019Q4-base:1.1
	pkgsrc-2019Q3:1.1.0.12
	pkgsrc-2019Q3-base:1.1
	pkgsrc-2019Q2:1.1.0.10
	pkgsrc-2019Q2-base:1.1
	pkgsrc-2019Q1:1.1.0.8
	pkgsrc-2019Q1-base:1.1
	pkgsrc-2018Q4:1.1.0.6
	pkgsrc-2018Q4-base:1.1
	pkgsrc-2018Q3:1.1.0.4
	pkgsrc-2018Q3-base:1.1
	pkgsrc-2018Q2:1.1.0.2
	pkgsrc-2018Q2-base:1.1;
locks; strict;
comment	@# @;


1.1
date	2018.04.27.20.28.28;	author bacon;	state Exp;
branches;
next	;
commitid	PIQsEyVN4kVJw7AA;


desc
@@


1.1
log
@biology/ncbi-blast+: import ncbi-blast+-2.7.1

The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity
between sequences. The program compares nucleotide or protein sequences to
sequence databases and calculates the statistical significance of matches.
BLAST can be used to infer functional and evolutionary relationships between
sequences as well as help identify members of gene families.

OK wiz@@
@
text
@$NetBSD$

# Add destdir suppot and fix perms on installed files

--- src/build-system/Makefile.in.top.orig	2017-02-01 16:52:02.000000000 +0000
+++ src/build-system/Makefile.in.top
@@@@ -37,22 +37,26 @@@@ check: $(PROJECTS)
 	fi
 
 install-toolkit:
-	-$(RMDIR) $(pincludedir)
-	$(INSTALL) -d $(bindir) $(libdir) $(pincludedir)
-	$(INSTALL) $(lbindir)/* $(bindir)
-	$(INSTALL) -m 644 $(llibdir)/*.* $(libdir)
+	-$(RMDIR) $(DESTDIR)$(pincludedir)
+	$(INSTALL) -d $(DESTDIR)$(bindir) $(DESTDIR)$(libdir) $(DESTDIR)$(pincludedir)
+	$(INSTALL) -m 755 $(lbindir)/* $(DESTDIR)$(bindir)
+	$(INSTALL) -m 644 $(llibdir)/*.* $(DESTDIR)$(libdir)
 	if test -d $(llibdir)/ncbi; then \
-	    cp -pPR $(llibdir)/ncbi $(libdir)/; \
+	    cp -pPR $(llibdir)/ncbi $(DESTDIR)$(libdir)/; \
 	fi
-	-rm -f $(libdir)/lib*-static.a
-	cd $(libdir)  && \
+	-rm -f $(DESTDIR)$(libdir)/lib*-static.a
+	cd $(DESTDIR)$(libdir)  && \
 	    for x in *.a; do \
 	        $(LN_S) "$$x" "`$(BASENAME) \"$$x\" .a`-static.a"; \
 	    done
+	find $(DESTDIR)$(libdir) -name '*.a' -exec chmod 644 '{}' \;
+	find $(DESTDIR)$(libdir) -name '*.so*' -exec chmod 755 '{}' \;
 	for d in $(includedir0) $(incdir); do \
 	    cd $$d && find * -name .svn -prune -o -print | \
-                cpio -pd $(pincludedir) ; \
+                cpio -pd $(DESTDIR)$(pincludedir) ; \
 	done
+	find $(DESTDIR)$(pincludedir) -type f -exec chmod 644 '{}' \;
+	find $(DESTDIR)$(pincludedir) -type d -exec chmod 755 '{}' \;
 ## set up appropriate build and status directories somewhere under $(libdir)?
 
 install-gbench:
@