head 1.41; access; symbols pkgsrc-2023Q4:1.41.0.2 pkgsrc-2023Q4-base:1.41 pkgsrc-2023Q3:1.39.0.2 pkgsrc-2023Q3-base:1.39 pkgsrc-2023Q2:1.35.0.2 pkgsrc-2023Q2-base:1.35 pkgsrc-2023Q1:1.33.0.4 pkgsrc-2023Q1-base:1.33 pkgsrc-2022Q4:1.33.0.2 pkgsrc-2022Q4-base:1.33 pkgsrc-2022Q3:1.31.0.2 pkgsrc-2022Q3-base:1.31 pkgsrc-2022Q2:1.29.0.2 pkgsrc-2022Q2-base:1.29 pkgsrc-2022Q1:1.27.0.2 pkgsrc-2022Q1-base:1.27 pkgsrc-2021Q4:1.26.0.2 pkgsrc-2021Q4-base:1.26 pkgsrc-2021Q3:1.24.0.4 pkgsrc-2021Q3-base:1.24 pkgsrc-2021Q2:1.24.0.2 pkgsrc-2021Q2-base:1.24 pkgsrc-2021Q1:1.20.0.4 pkgsrc-2021Q1-base:1.20 pkgsrc-2020Q4:1.20.0.2 pkgsrc-2020Q4-base:1.20 pkgsrc-2020Q3:1.18.0.2 pkgsrc-2020Q3-base:1.18 pkgsrc-2020Q2:1.17.0.2 pkgsrc-2020Q2-base:1.17 pkgsrc-2020Q1:1.13.0.2 pkgsrc-2020Q1-base:1.13 pkgsrc-2019Q4:1.12.0.4 pkgsrc-2019Q4-base:1.12 pkgsrc-2019Q3:1.11.0.2 pkgsrc-2019Q3-base:1.11 pkgsrc-2019Q2:1.9.0.2 pkgsrc-2019Q2-base:1.9 pkgsrc-2019Q1:1.6.0.2 pkgsrc-2019Q1-base:1.6 pkgsrc-2018Q4:1.5.0.2 pkgsrc-2018Q4-base:1.5 pkgsrc-2018Q3:1.4.0.2 pkgsrc-2018Q3-base:1.4 pkgsrc-2018Q2:1.2.0.2 pkgsrc-2018Q2-base:1.2; locks; strict; comment @# @; 1.41 date 2023.11.08.13.18.12; author wiz; state Exp; branches; next 1.40; commitid PsuHTklAIsF4bOLE; 1.40 date 2023.10.24.22.08.18; author wiz; state Exp; branches; next 1.39; commitid MTsrqKm6aGrQAVJE; 1.39 date 2023.09.14.00.39.17; author bacon; state Exp; branches; next 1.38; commitid as2t7XLlHAYEKFEE; 1.38 date 2023.08.14.05.23.51; author wiz; state Exp; branches; next 1.37; commitid LOSB79OLVxvXjIAE; 1.37 date 2023.07.18.12.57.52; author nia; state Exp; branches; next 1.36; commitid MnzINKtMQl8DHhxE; 1.36 date 2023.07.09.08.39.03; author nia; state Exp; branches; next 1.35; commitid pySFg2DcFuvOy6wE; 1.35 date 2023.05.28.22.48.27; author bacon; state Exp; branches; next 1.34; commitid 2xcMmRnzVVMOAMqE; 1.34 date 2023.04.19.08.09.12; author adam; state Exp; branches; next 1.33; commitid B8gCWhWtMX9vZGlE; 1.33 date 2022.11.23.16.19.25; author adam; state Exp; branches; next 1.32; commitid ju2K3LUYlTJKqQ2E; 1.32 date 2022.10.26.10.31.14; author wiz; state Exp; branches; next 1.31; commitid PVFjlIYUKslkpdZD; 1.31 date 2022.06.30.11.18.04; author nia; state Exp; branches; next 1.30; commitid AhctUV91Vubws3KD; 1.30 date 2022.06.28.11.31.01; author wiz; state Exp; branches; next 1.29; commitid D2UoJrTHpoHEANJD; 1.29 date 2022.04.18.19.10.27; author adam; state Exp; branches; next 1.28; commitid eC9Na3jrfOOUpIAD; 1.28 date 2022.04.10.20.54.51; author bacon; state Exp; branches; next 1.27; commitid TQj3iJRfIuYUeHzD; 1.27 date 2022.03.16.00.32.01; author bacon; state Exp; branches; next 1.26; commitid OtgfHHAtoA62inwD; 1.26 date 2021.12.08.16.03.24; author adam; state Exp; branches; next 1.25; commitid 2PyWjHx5T8rqARjD; 1.25 date 2021.09.29.19.00.20; author adam; state Exp; branches; next 1.24; commitid WsBUbBM52TSePSaD; 1.24 date 2021.06.11.13.47.39; author bacon; state Exp; branches; next 1.23; commitid ueYGTanmtjc5DIWC; 1.23 date 2021.05.24.19.49.11; author wiz; state Exp; branches; next 1.22; commitid qokaiStTApGMcrUC; 1.22 date 2021.04.21.13.24.24; author adam; state Exp; branches; next 1.21; commitid RAyVO2K5RkoQ8aQC; 1.21 date 2021.04.21.11.41.03; author adam; state Exp; branches; next 1.20; commitid fph0Axs0eT3az9QC; 1.20 date 2020.12.04.20.45.00; author nia; state Exp; branches; next 1.19; commitid FPz71MqRX3WN0tyC; 1.19 date 2020.11.05.09.07.32; author ryoon; state Exp; branches; next 1.18; commitid VqGaBtHnBBcd5GuC; 1.18 date 2020.08.31.18.06.39; author wiz; state Exp; branches; next 1.17; commitid 7zxRbfOkDOoxbfmC; 1.17 date 2020.06.02.08.23.16; author adam; state Exp; branches; next 1.16; commitid nisovMpvvZm3RCaC; 1.16 date 2020.05.25.05.19.06; author rillig; state Exp; branches; next 1.15; commitid dZgPm70pqbna6A9C; 1.15 date 2020.05.22.10.55.57; author adam; state Exp; branches; next 1.14; commitid m1Z0QPvTTTWz3e9C; 1.14 date 2020.04.12.08.28.20; author adam; state Exp; branches; next 1.13; commitid 7jZFLCnc3RCww44C; 1.13 date 2020.03.08.16.48.52; author wiz; state Exp; branches; next 1.12; commitid rcNYzTQo8icypCZB; 1.12 date 2019.11.02.22.09.00; author rillig; state Exp; branches; next 1.11; commitid Pse3d2XETrB0hkJB; 1.11 date 2019.08.11.13.18.00; author wiz; state Exp; branches; next 1.10; commitid Ifet9Pg6Qt99ZByB; 1.10 date 2019.07.20.22.46.10; author wiz; state Exp; branches; next 1.9; commitid dMrQLvIeoazTQPvB; 1.9 date 2019.06.28.20.17.35; author bacon; state Exp; branches; next 1.8; commitid m3L9aWirmusVIZsB; 1.8 date 2019.04.25.07.32.37; author maya; state Exp; branches; next 1.7; commitid 1FEMQBEPb9uTxHkB; 1.7 date 2019.04.03.00.32.26; author ryoon; state Exp; branches; next 1.6; commitid pkuNrSZ2MZiLWPhB; 1.6 date 2019.01.07.15.00.10; author bacon; state Exp; branches; next 1.5; commitid dfB4imZMCqpytR6B; 1.5 date 2018.12.09.18.52.17; author adam; state Exp; branches; next 1.4; commitid Pdg91emznUBdJ93B; 1.4 date 2018.07.20.03.34.03; author ryoon; state Exp; branches; next 1.3; commitid 09Go9qhjDl36dPKA; 1.3 date 2018.07.04.13.40.10; author jperkin; state Exp; branches; next 1.2; commitid NnIyRkdX3Lbg3PIA; 1.2 date 2018.05.22.21.37.29; author bacon; state Exp; branches; next 1.1; commitid bEArCpKSzJyI5lDA; 1.1 date 2018.04.27.20.28.28; author bacon; state Exp; branches; next ; commitid PIQsEyVN4kVJw7AA; desc @@ 1.41 log @*: recursive bump for icu 74.1 @ text @# $NetBSD: Makefile,v 1.40 2023/10/24 22:08:18 wiz Exp $ DISTNAME= ncbi-blast-2.14.1+-src PKGNAME= ${DISTNAME:S/+-src//:S/blast/blast+/} PKGREVISION= 2 CATEGORIES= biology MASTER_SITES= https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \ https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PKGVERSION_NOREV}/ MAINTAINER= bacon@@NetBSD.org HOMEPAGE= http://blast.ncbi.nlm.nih.gov/ COMMENT= NCBI implementation of Basic Local Alignment Search Tool LICENSE= public-domain USE_CXX_FEATURES= c++17 # Nobody does bioinformatics on 32-bit processors anymore ONLY_FOR_PLATFORM= ${LP64PLATFORMS} # Fix "undefined _ThreadRuneLocale" error on FreeBSD 10.0 # Fix "unknown options" in configure SUBST_CLASSES+= configure SUBST_STAGE.configure= pre-configure SUBST_SED.configure+= -e 's|-D_THREAD_SAFE|-D_THREAD_SAFE -D__RUNETYPE_INTERNAL|' SUBST_SED.configure+= -e '/--infodir=DIR/d' SUBST_SED.configure+= -e '/--mandir=DIR/d' SUBST_FILES.configure+= src/build-system/configure USE_TOOLS+= bash gmake perl USE_LANGUAGES= c c++ GNU_CONFIGURE= yes GNU_CONFIGURE_STRICT= no # doesn't know --enable-option-checking REPLACE_BASH= scripts/common/impl/define_random_macros.sh REPLACE_BASH+= src/app/blast/get_species_taxids.sh REPLACE_PERL= src/app/blast/legacy_blast.pl src/app/blast/update_blastdb.pl REPLACE_PYTHON= src/app/winmasker/windowmasker_2.2.22_adapter.py REPLACE_PYTHON+= src/app/blast/cleanup-blastdb-volumes.py MKPIE_SUPPORTED= no # Temporary fix # The test for amq can hang, but amq is not needed so just avoid the test # configure chooses /usr/local/bin/ar with no flags # Resolve a conflict with libproj by moving libs to a subdir CONFIGURE_ENV= ncbi_cv_prog_amq_w=no CONFIGURE_ARGS+= AR="ar cr" --without-boost # pkglint warning, but build fails on NetBSD without it CONFIGURE_ARGS+= --libdir=${PREFIX}/lib/ncbi-tools++ WRKSRC= ${WRKDIR}/${DISTNAME}/c++ .include "../../mk/bsd.prefs.mk" .if ${OPSYS} == NetBSD # statfs is deprecated on NetBSD, but still exists in libc # configure checks only for undefined reference, not for usability CONFIGURE_ENV+= ac_cv_func_statfs=no .endif .if ${OPSYS} == Darwin CONFIGURE_ARGS+= --without-openmp .endif # c++/src/objtools/edit/seq_entry_edit.cpp: In member function 'void ncbi::objects::edit::{anonymous}::CSeqdescSortMap::Init()': # c++/src/objtools/edit/seq_entry_edit.cpp:172:44: error: array subscript has type 'char' [-Werror=char-subscripts] # while (descr_insert_order[index] != 0) # Maybe fix this later. BUILDLINK_TRANSFORM+= rm:-Werror=char-subscripts post-install: ${FIND} ${DESTDIR}${PREFIX} -name '\.cvs*' -exec rm -rf '{}' \; ${FIND} ${DESTDIR}${PREFIX} -name '\.subversion*' -exec rm -rf '{}' \; ${FIND} ${DESTDIR}${PREFIX} -name '\.git*' -exec rm -rf '{}' \; .if ${OPSYS} != Darwin ${STRIP} ${DESTDIR}${PREFIX}/lib/ncbi-tools++/*.so ${RM} -rf ${WRKDIR}/.home .endif .include "../../devel/zlib/buildlink3.mk" .include "../../archivers/lzo/buildlink3.mk" .include "../../archivers/bzip2/buildlink3.mk" .include "../../archivers/zstd/buildlink3.mk" .include "../../devel/pcre/buildlink3.mk" .include "../../databases/lmdb/buildlink3.mk" .include "../../security/gnutls/buildlink3.mk" .include "../../devel/gmp/buildlink3.mk" .include "../../devel/libidn2/buildlink3.mk" .include "../../security/nettle/buildlink3.mk" .include "../../security/libtasn1/buildlink3.mk" .include "../../security/p11-kit/buildlink3.mk" .include "../../security/libgcrypt/buildlink3.mk" .include "../../databases/sqlite3/buildlink3.mk" .include "../../security/libgpg-error/buildlink3.mk" .include "../../lang/python/application.mk" .include "../../mk/bsd.pkg.mk" @ 1.40 log @*: bump for openssl 3 @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.39 2023/09/14 00:39:17 bacon Exp $ d5 1 a5 1 PKGREVISION= 1 @ 1.39 log @biology/ncbi-blast+: Update to 2.14.1 A few minor fixes and enhancements Changes: https://www.ncbi.nlm.nih.gov/books/NBK131777/ @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.38 2023/08/14 05:23:51 wiz Exp $ d5 1 @ 1.38 log @*: recursive bump for Python 3.11 as new default @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.37 2023/07/18 12:57:52 nia Exp $ d3 1 a3 1 DISTNAME= ncbi-blast-2.14.0+-src a4 1 PKGREVISION= 1 d14 1 a14 1 USE_CXX_FEATURES+= c++17 d44 1 d72 1 @ 1.37 log @biology: Where possible, adjust packages to use USE_(CC|CXX)_FEATURES @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.36 2023/07/09 08:39:03 nia Exp $ d5 1 @ 1.36 log @ncbi-blast+: Require at least gcc7. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.35 2023/05/28 22:48:27 bacon Exp $ d14 1 a14 3 # configure: error: # Please upgrade to a compiler supporting C++ '17, such as GCC 7.1 or newer. GCC_REQD+= 7 @ 1.35 log @biology/ncbi-blast+: Update to 2.14.0 Several minor bug fixes, a few other enhancements Also set only for 64-bit platforms (required for most bioinformatics) Changes: https://www.ncbi.nlm.nih.gov/sites/books/NBK131777/ @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.11 2019/08/11 13:18:00 wiz Exp $ d14 4 @ 1.34 log @revbump after textproc/icu update @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.33 2022/11/23 16:19:25 adam Exp $ d3 1 a3 1 DISTNAME= ncbi-blast-2.13.0+-src a4 1 PKGREVISION= 6 d14 3 d64 3 a66 1 ${RM} ${DESTDIR}${PREFIX}/include/ncbi-tools++/*/*/.cvsignore.extra d74 1 @ 1.33 log @massive revision bump after textproc/icu update @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.32 2022/10/26 10:31:14 wiz Exp $ d5 1 a5 1 PKGREVISION= 5 @ 1.32 log @*: bump PKGREVISION for libunistring shlib major bump @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.31 2022/06/30 11:18:04 nia Exp $ d5 1 a5 1 PKGREVISION= 4 @ 1.31 log @*: Revbump packages that use Python at runtime without a PKGNAME prefix @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.30 2022/06/28 11:31:01 wiz Exp $ d5 1 a5 1 PKGREVISION= 3 @ 1.30 log @*: recursive bump for perl 5.36 @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.29 2022/04/18 19:10:27 adam Exp $ d5 1 a5 1 PKGREVISION= 2 @ 1.29 log @revbump for textproc/icu update @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.28 2022/04/10 20:54:51 bacon Exp $ d5 1 a5 1 PKGREVISION= 1 @ 1.28 log @biology/ncbi-blast+: Update to 2.13.0 Several minor bug fixes and improvements since 2.11.0 Changes: https://www.ncbi.nlm.nih.gov/books/NBK131777/?report=reader @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.11 2019/08/11 13:18:00 wiz Exp $ d5 1 @ 1.27 log @biology/ncbi-blast+: Disable MKPIE Temporary fix to unbreak build on NetBSD with freeze approaching @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.26 2021/12/08 16:03:24 adam Exp $ d3 1 a3 1 DISTNAME= ncbi-blast-2.11.0+-src a4 1 PKGREVISION= 2 d50 4 @ 1.26 log @revbump for icu and libffi @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.25 2021/09/29 19:00:20 adam Exp $ d33 1 @ 1.25 log @revbump for boost-libs @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.24 2021/06/11 13:47:39 bacon Exp $ d5 1 a5 1 PKGREVISION= 1 @ 1.24 log @biology/ncbi-blast+: Update to 2.11.0 Release notes: https://www.ncbi.nlm.nih.gov/books/NBK131777/ @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.11 2019/08/11 13:18:00 wiz Exp $ d5 1 @ 1.23 log @*: recursive bump for perl 5.34 @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.22 2021/04/21 13:24:24 adam Exp $ d3 1 a3 1 DISTNAME= ncbi-blast-2.8.1+-src a4 1 PKGREVISION= 15 d21 1 a21 1 SUBST_FILES.configure+= ${WRKSRC}/src/build-system/configure d31 1 d57 1 d59 1 @ 1.22 log @revbump for boost-libs @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.21 2021/04/21 11:41:03 adam Exp $ d5 1 a5 1 PKGREVISION= 14 @ 1.21 log @revbump for textproc/icu @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.20 2020/12/04 20:45:00 nia Exp $ d5 1 a5 1 PKGREVISION= 13 @ 1.20 log @Revbump packages with a runtime Python dep but no version prefix. For the Python 3.8 default switch. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.19 2020/11/05 09:07:32 ryoon Exp $ d5 1 a5 1 PKGREVISION= 12 @ 1.19 log @*: Recursive revbump from textproc/icu-68.1 @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.18 2020/08/31 18:06:39 wiz Exp $ d5 1 a5 1 PKGREVISION= 11 @ 1.18 log @*: bump PKGREVISION for perl-5.32. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.17 2020/06/02 08:23:16 adam Exp $ d5 1 a5 1 PKGREVISION= 10 @ 1.17 log @Revbump for icu @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.16 2020/05/25 05:19:06 rillig Exp $ d5 1 a5 1 PKGREVISION= 9 @ 1.16 log @biology/ncbi-blast+: document possible array[char] bug @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.15 2020/05/22 10:55:57 adam Exp $ d5 1 a5 1 PKGREVISION= 8 @ 1.15 log @revbump after updating security/nettle @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.14 2020/04/12 08:28:20 adam Exp $ d49 6 @ 1.14 log @Recursive revision bump after textproc/icu update @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.13 2020/03/08 16:48:52 wiz Exp $ d5 1 a5 1 PKGREVISION= 7 @ 1.13 log @*: recursive bump for libffi @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.12 2019/11/02 22:09:00 rillig Exp $ d5 1 a5 1 PKGREVISION= 6 @ 1.12 log @biology: align variable assignments pkglint -Wall -F --only aligned --only indent -r @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.11 2019/08/11 13:18:00 wiz Exp $ d5 1 a5 1 PKGREVISION= 5 @ 1.11 log @Bump PKGREVISIONs for perl 5.30.0 @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.10 2019/07/20 22:46:10 wiz Exp $ d24 3 a26 3 USE_TOOLS+= bash gmake perl USE_LANGUAGES= c c++ GNU_CONFIGURE= yes d28 4 a31 4 REPLACE_BASH= scripts/common/impl/define_random_macros.sh REPLACE_BASH+= src/app/blast/get_species_taxids.sh REPLACE_PERL= src/app/blast/legacy_blast.pl src/app/blast/update_blastdb.pl REPLACE_PYTHON= src/app/winmasker/windowmasker_2.2.22_adapter.py @ 1.10 log @*: recursive bump for nettle 3.5.1 @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.9 2019/06/28 20:17:35 bacon Exp $ d5 1 a5 1 PKGREVISION= 4 @ 1.9 log @biology/ncbi-blast+: Unbreak configure Configure script does not support --enable-option-checking Also add perl to USE_TOOLS @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.8 2019/04/25 07:32:37 maya Exp $ d5 1 a5 1 PKGREVISION= 3 @ 1.8 log @PKGREVISION bump for anything using python without a PYPKGPREFIX. This is a semi-manual PKGREVISION bump. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.7 2019/04/03 00:32:26 ryoon Exp $ d5 1 a5 1 PKGREVISION= 2 d24 1 a24 1 USE_TOOLS+= bash gmake d27 1 @ 1.7 log @Recursive revbump from textproc/icu @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.6 2019/01/07 15:00:10 bacon Exp $ d5 1 a5 1 PKGREVISION= 1 @ 1.6 log @ncbi-blast+: Upgrade to 2.8.1 Support for new BLAST database format Increased makeblastdb output file size limit to 4GB Other minor bug fixes and enhancements OK wiz@@ @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.4 2018/07/20 03:34:03 ryoon Exp $ d5 1 @ 1.5 log @revbump after updating textproc/icu @ text @d3 2 a4 3 DISTNAME= ncbi-blast-${PV}+-src PKGNAME= ncbi-blast+-${PV} PKGREVISION= 3 d7 1 a7 1 https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PV}/ d23 1 a23 1 USE_TOOLS+= gmake d26 2 a27 1 # REPLACE_BASH= compilers/xcode30_prj/configure a36 1 # MAKE_JOBS_SAFE= no # Intermittent issues a46 2 PV= 2.7.1 @ 1.4 log @Recursive revbump from textproc/icu-62.1 @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.3 2018/07/04 13:40:10 jperkin Exp $ d5 1 a5 1 PKGREVISION= 2 @ 1.3 log @*: Move SUBST_STAGE from post-patch to pre-configure Performing substitutions during post-patch breaks tools such as mkpatches, making it very difficult to regenerate correct patches after making changes, and often leading to substituted string replacements being committed. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.2 2018/05/22 21:37:29 bacon Exp $ d5 1 a5 1 PKGREVISION= 1 @ 1.2 log @biology/ncbi-blast+: Respect env to support PKGSRC_USE_RELRO Fix a previous patch that hard-coded relro support by patching in pkgsrc CFLAGS, CXXFLAGS, and LDFLAGS instead. OK wiz@@ @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.1 2018/04/27 20:28:28 bacon Exp $ d18 1 a18 1 SUBST_STAGE.configure= post-patch @ 1.1 log @biology/ncbi-blast+: import ncbi-blast+-2.7.1 The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance of matches. BLAST can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families. OK wiz@@ @ text @d1 1 a1 1 # $NetBSD$ d5 1 @