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locks; strict; comment @# @; 1.7 date 2021.10.26.10.03.39; author nia; state Exp; branches; next 1.6; commitid R64ULQLy8JYkZieD; 1.6 date 2021.10.07.13.19.39; author nia; state Exp; branches; next 1.5; commitid CQ422EVgQgYxGSbD; 1.5 date 2015.11.02.18.42.21; author agc; state Exp; branches; next 1.4; commitid QWWynLrDLYuI4yHy; 1.4 date 2005.02.22.21.28.55; author agc; state Exp; branches; next 1.3; 1.3 date 2004.08.19.16.47.01; author ben; state Exp; branches; next 1.2; 1.2 date 2003.10.07.18.20.15; author jschauma; state Exp; branches; next 1.1; 1.1 date 2003.09.30.02.11.06; author jschauma; state Exp; branches 1.1.1.1; next ; 1.1.1.1 date 2003.09.30.02.11.06; author jschauma; state Exp; branches; next ; desc @@ 1.7 log @biology: Replace RMD160 checksums with BLAKE2s checksums All checksums have been double-checked against existing RMD160 and SHA512 hashes @ text @$NetBSD: distinfo,v 1.6 2021/10/07 13:19:39 nia Exp $ BLAKE2s (glimmer213.tar.gz) = 18291fcdc3900bdec655cd3d941b6ac39c15b92da2e6a933484fc19a6d7a1f8d SHA512 (glimmer213.tar.gz) = 3289e65f93c6fcf5f295b2e22258c424d6325745da13863d89e177c0d25c6927d2ff45b0221cb208f8ad0667ff0ad85909a50c14591bd7f93c74f390c7bedc57 Size (glimmer213.tar.gz) = 79858 bytes SHA1 (patch-aa) = ceb45f887c32e91bd96b9d2c8dae39c9cc6fc658 SHA1 (patch-ab) = e2afaa9ff8e0d4a2647a77bbf7e1ba4012d53061 @ 1.6 log @biology: Remove SHA1 hashes for distfiles @ text @d1 1 a1 1 $NetBSD: distinfo,v 1.5 2015/11/02 18:42:21 agc Exp $ d3 1 a3 1 RMD160 (glimmer213.tar.gz) = 1667d04bc66f373d5df395e16b79b07814d3ea2c @ 1.5 log @Add SHA512 digests for distfiles for biology category. Existing SHA1 digests verified, all found to be the same on the machine holding the existing distfiles (morden). Existing SHA1 digests retained for now as an audit trail. @ text @d1 1 a1 1 $NetBSD: distinfo,v 1.4 2005/02/22 21:28:55 agc Exp $ a2 1 SHA1 (glimmer213.tar.gz) = 772752c3c1543066e4c156e5ec0a2e4f0a24c688 @ 1.4 log @Add RMD160 digests in addition to the SHA1 ones. @ text @d1 1 a1 1 $NetBSD: distinfo,v 1.3 2004/08/19 16:47:01 ben Exp $ d5 1 @ 1.3 log @Update to glimmer-2.13, thanks to cngo@@nmsu.edu. CHANGELOG, 12 October 2003 add -X option to glimmer2, to allow orfs extending off ends of sequence to be scored. Also fix bug affecting -p and -o options when user chose zero overlap. @ text @d1 1 a1 1 $NetBSD: distinfo,v 1.2 2003/10/07 18:20:15 jschauma Exp $ d4 1 @ 1.2 log @Apply patches from Tyler Retzlaff in PR pkg/23083 to make this behave with gcc3. While here, update to version 2.12 (previous version was erraneously named 2.1, when it should have been 2.10) which is the only distfile available on the ftp site. Changelog seems to say: - Fix bug on long-orfs.cc to avoid occasional array out-of-bounds error (detected on Mac OS X). @ text @d1 1 a1 1 $NetBSD: distinfo,v 1.1.1.1 2003/09/30 02:11:06 jschauma Exp $ d3 2 a4 2 SHA1 (glimmer212.tar.gz) = f2291c3b9024c56b884d6dcab032cb36f54074f6 Size (glimmer212.tar.gz) = 79431 bytes @ 1.1 log @Initial revision @ text @d1 1 a1 1 $NetBSD$ d3 2 a4 2 SHA1 (glimmer21.tar.gz) = 676bf2150389b4eb817ef2db7c646a332151eaf7 Size (glimmer21.tar.gz) = 79091 bytes d6 1 @ 1.1.1.1 log @Initial import of glimmer, one of the many packages provided by brook at biology dot nmsu dot edu and his team at NMSU. Glimmer (Gene Locator and Interpolated Markov Modeler) is a system for finding genes in microbial DNA, especially the genomes of bacteria and archaea. Glimmer uses interpolated Markov models (IMMs) to identify the coding regions and distinguish them from noncoding DNA. The IMM approach uses a combination of Markov models from 1st through 8th-order, weighting each model according to its predictive power. @ text @@