head 1.12; access; symbols pkgsrc-2023Q4:1.12.0.22 pkgsrc-2023Q4-base:1.12 pkgsrc-2023Q3:1.12.0.20 pkgsrc-2023Q3-base:1.12 pkgsrc-2023Q2:1.12.0.18 pkgsrc-2023Q2-base:1.12 pkgsrc-2023Q1:1.12.0.16 pkgsrc-2023Q1-base:1.12 pkgsrc-2022Q4:1.12.0.14 pkgsrc-2022Q4-base:1.12 pkgsrc-2022Q3:1.12.0.12 pkgsrc-2022Q3-base:1.12 pkgsrc-2022Q2:1.12.0.10 pkgsrc-2022Q2-base:1.12 pkgsrc-2022Q1:1.12.0.8 pkgsrc-2022Q1-base:1.12 pkgsrc-2021Q4:1.12.0.6 pkgsrc-2021Q4-base:1.12 pkgsrc-2021Q3:1.12.0.4 pkgsrc-2021Q3-base:1.12 pkgsrc-2021Q2:1.12.0.2 pkgsrc-2021Q2-base:1.12 pkgsrc-2021Q1:1.11.0.52 pkgsrc-2021Q1-base:1.11 pkgsrc-2020Q4:1.11.0.50 pkgsrc-2020Q4-base:1.11 pkgsrc-2020Q3:1.11.0.48 pkgsrc-2020Q3-base:1.11 pkgsrc-2020Q2:1.11.0.44 pkgsrc-2020Q2-base:1.11 pkgsrc-2020Q1:1.11.0.24 pkgsrc-2020Q1-base:1.11 pkgsrc-2019Q4:1.11.0.46 pkgsrc-2019Q4-base:1.11 pkgsrc-2019Q3:1.11.0.42 pkgsrc-2019Q3-base:1.11 pkgsrc-2019Q2:1.11.0.40 pkgsrc-2019Q2-base:1.11 pkgsrc-2019Q1:1.11.0.38 pkgsrc-2019Q1-base:1.11 pkgsrc-2018Q4:1.11.0.36 pkgsrc-2018Q4-base:1.11 pkgsrc-2018Q3:1.11.0.34 pkgsrc-2018Q3-base:1.11 pkgsrc-2018Q2:1.11.0.32 pkgsrc-2018Q2-base:1.11 pkgsrc-2018Q1:1.11.0.30 pkgsrc-2018Q1-base:1.11 pkgsrc-2017Q4:1.11.0.28 pkgsrc-2017Q4-base:1.11 pkgsrc-2017Q3:1.11.0.26 pkgsrc-2017Q3-base:1.11 pkgsrc-2017Q2:1.11.0.22 pkgsrc-2017Q2-base:1.11 pkgsrc-2017Q1:1.11.0.20 pkgsrc-2017Q1-base:1.11 pkgsrc-2016Q4:1.11.0.18 pkgsrc-2016Q4-base:1.11 pkgsrc-2016Q3:1.11.0.16 pkgsrc-2016Q3-base:1.11 pkgsrc-2016Q2:1.11.0.14 pkgsrc-2016Q2-base:1.11 pkgsrc-2016Q1:1.11.0.12 pkgsrc-2016Q1-base:1.11 pkgsrc-2015Q4:1.11.0.10 pkgsrc-2015Q4-base:1.11 pkgsrc-2015Q3:1.11.0.8 pkgsrc-2015Q3-base:1.11 pkgsrc-2015Q2:1.11.0.6 pkgsrc-2015Q2-base:1.11 pkgsrc-2015Q1:1.11.0.4 pkgsrc-2015Q1-base:1.11 pkgsrc-2014Q4:1.11.0.2 pkgsrc-2014Q4-base:1.11 pkgsrc-2014Q3:1.10.0.18 pkgsrc-2014Q3-base:1.10 pkgsrc-2014Q2:1.10.0.16 pkgsrc-2014Q2-base:1.10 pkgsrc-2014Q1:1.10.0.14 pkgsrc-2014Q1-base:1.10 pkgsrc-2013Q4:1.10.0.12 pkgsrc-2013Q4-base:1.10 pkgsrc-2013Q3:1.10.0.10 pkgsrc-2013Q3-base:1.10 pkgsrc-2013Q2:1.10.0.8 pkgsrc-2013Q2-base:1.10 pkgsrc-2013Q1:1.10.0.6 pkgsrc-2013Q1-base:1.10 pkgsrc-2012Q4:1.10.0.4 pkgsrc-2012Q4-base:1.10 pkgsrc-2012Q3:1.10.0.2 pkgsrc-2012Q3-base:1.10 pkgsrc-2012Q2:1.9.0.40 pkgsrc-2012Q2-base:1.9 pkgsrc-2012Q1:1.9.0.38 pkgsrc-2012Q1-base:1.9 pkgsrc-2011Q4:1.9.0.36 pkgsrc-2011Q4-base:1.9 pkgsrc-2011Q3:1.9.0.34 pkgsrc-2011Q3-base:1.9 pkgsrc-2011Q2:1.9.0.32 pkgsrc-2011Q2-base:1.9 pkgsrc-2011Q1:1.9.0.30 pkgsrc-2011Q1-base:1.9 pkgsrc-2010Q4:1.9.0.28 pkgsrc-2010Q4-base:1.9 pkgsrc-2010Q3:1.9.0.26 pkgsrc-2010Q3-base:1.9 pkgsrc-2010Q2:1.9.0.24 pkgsrc-2010Q2-base:1.9 pkgsrc-2010Q1:1.9.0.22 pkgsrc-2010Q1-base:1.9 pkgsrc-2009Q4:1.9.0.20 pkgsrc-2009Q4-base:1.9 pkgsrc-2009Q3:1.9.0.18 pkgsrc-2009Q3-base:1.9 pkgsrc-2009Q2:1.9.0.16 pkgsrc-2009Q2-base:1.9 pkgsrc-2009Q1:1.9.0.14 pkgsrc-2009Q1-base:1.9 pkgsrc-2008Q4:1.9.0.12 pkgsrc-2008Q4-base:1.9 pkgsrc-2008Q3:1.9.0.10 pkgsrc-2008Q3-base:1.9 cube-native-xorg:1.9.0.8 cube-native-xorg-base:1.9 pkgsrc-2008Q2:1.9.0.6 pkgsrc-2008Q2-base:1.9 cwrapper:1.9.0.4 pkgsrc-2008Q1:1.9.0.2 pkgsrc-2008Q1-base:1.9 pkgsrc-2007Q4:1.8.0.22 pkgsrc-2007Q4-base:1.8 pkgsrc-2007Q3:1.8.0.20 pkgsrc-2007Q3-base:1.8 pkgsrc-2007Q2:1.8.0.18 pkgsrc-2007Q2-base:1.8 pkgsrc-2007Q1:1.8.0.16 pkgsrc-2007Q1-base:1.8 pkgsrc-2006Q4:1.8.0.14 pkgsrc-2006Q4-base:1.8 pkgsrc-2006Q3:1.8.0.12 pkgsrc-2006Q3-base:1.8 pkgsrc-2006Q2:1.8.0.10 pkgsrc-2006Q2-base:1.8 pkgsrc-2006Q1:1.8.0.8 pkgsrc-2006Q1-base:1.8 pkgsrc-2005Q4:1.8.0.6 pkgsrc-2005Q4-base:1.8 pkgsrc-2005Q3:1.8.0.4 pkgsrc-2005Q3-base:1.8 pkgsrc-2005Q2:1.8.0.2 pkgsrc-2005Q2-base:1.8 pkgsrc-2005Q1:1.6.0.6 pkgsrc-2005Q1-base:1.6 pkgsrc-2004Q4:1.6.0.4 pkgsrc-2004Q4-base:1.6 pkgsrc-2004Q3:1.6.0.2 pkgsrc-2004Q3-base:1.6 pkgsrc-2004Q2:1.5.0.4 pkgsrc-2004Q2-base:1.5 pkgsrc-2004Q1:1.5.0.2 pkgsrc-2004Q1-base:1.5 pkgsrc-2003Q4:1.3.0.10 pkgsrc-2003Q4-base:1.3 netbsd-1-6-1:1.3.0.6 netbsd-1-6-1-base:1.3 netbsd-1-6:1.3.0.8 netbsd-1-6-RELEASE-base:1.3 pkgviews:1.3.0.4 pkgviews-base:1.3 buildlink2:1.3.0.2 buildlink2-base:1.3 netbsd-1-5-PATCH003:1.3 netbsd-1-5-PATCH001:1.3 netbsd-1-5-RELEASE:1.2 netbsd-1-4-PATCH003:1.2 netbsd-1-4-PATCH002:1.1.1.1 comdex-fall-1999:1.1.1.1 pkgsrc-base:1.1.1.1 TNF:1.1.1; locks; strict; comment @# @; 1.12 date 2021.04.21.09.11.13; author wiz; state Exp; branches; next 1.11; commitid fkI1T8oS5SAQJ8QC; 1.11 date 2014.12.20.12.02.28; author mef; state Exp; branches; next 1.10; commitid iBaobAtankLs4M2y; 1.10 date 2012.09.11.20.32.12; author asau; state Exp; branches; next 1.9; 1.9 date 2008.03.03.01.10.05; author jlam; state Exp; branches; next 1.8; 1.8 date 2005.06.16.06.57.40; author jlam; state Exp; branches; next 1.7; 1.7 date 2005.05.07.20.55.26; author kristerw; state Exp; branches; next 1.6; 1.6 date 2004.08.16.23.45.59; author ben; state Exp; branches; next 1.5; 1.5 date 2004.01.29.13.41.05; author grant; state Exp; branches; next 1.4; 1.4 date 2004.01.20.12.08.40; author agc; state Exp; branches; next 1.3; 1.3 date 2001.02.16.13.41.29; author wiz; state Exp; branches; next 1.2; 1.2 date 2000.08.18.22.46.31; author hubertf; state Exp; branches; next 1.1; 1.1 date 99.07.28.20.18.55; author rh; state Exp; branches 1.1.1.1; next ; 1.1.1.1 date 99.07.28.20.18.55; author rh; state Exp; branches; next ; desc @@ 1.12 log @*: remove dead download location @ text @# $NetBSD: Makefile,v 1.11 2014/12/20 12:02:28 mef Exp $ DISTNAME= fastDNAml_1.2.2 PKGNAME= fastDNAml-1.2.2 CATEGORIES= biology #MASTER_SITES= http://geta.life.uiuc.edu/~gary/programs/fastDNAml/ MAINTAINER= babafou@@babafou.eu.org #HOMEPAGE= http://iubio.bio.indiana.edu/soft/molbio/evolve/fastdnaml/fastDNAml.html COMMENT= Program derived from Joseph Felsenstein's version 3.3 DNAML WRKSRC= ${WRKDIR}/${DISTNAME}/source INSTALLATION_DIRS= bin do-install: ${INSTALL_PROGRAM} ${WRKSRC}/fastDNAml ${DESTDIR}${PREFIX}/bin .for SCRIPT in ae2dnaml bootstrap categories categories_file \ checkpoint_summary clean_checkpoints clean_jumbles \ dnaml_progress fastDNAml_boot fastDNAml_loop \ frequencies global iterate_rates jumble min_info \ n_categories n_files out.PID outgroup printdata \ quickadd restart scores transition treefile \ treefile2prolog trees2NEXUS trees2prolog userlengths \ usertree usertrees weights weights_categories ${INSTALL_SCRIPT} ${WRKDIR}/${DISTNAME}/scripts/${SCRIPT} \ ${DESTDIR}${PREFIX}/bin .endfor ${INSTALL_DATA_DIR} ${DESTDIR}${PREFIX}/share/doc/fastDNAml .for DOC in fastDNAml_doc_1.2.txt fastDNAml_scripts.txt ${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/docs/${DOC} \ ${DESTDIR}${PREFIX}/share/doc/fastDNAml .endfor .include "../../mk/bsd.pkg.mk" @ 1.11 log @Update HOMEPAGE, was Host Unknown. But the link to download still gets 404. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.10 2012/09/11 20:32:12 asau Exp $ d6 1 a6 1 MASTER_SITES= http://geta.life.uiuc.edu/~gary/programs/fastDNAml/ d9 1 a9 1 HOMEPAGE= http://iubio.bio.indiana.edu/soft/molbio/evolve/fastdnaml/fastDNAml.html @ 1.10 log @"user-destdir" is default these days @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.9 2008/03/03 01:10:05 jlam Exp $ d9 1 a9 1 HOMEPAGE= http://geta.life.uiuc.edu/~gary/programs/fastDNAml.html @ 1.9 log @Mechanical changes to add full DESTDIR support to packages that install their files via a custom do-install target. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.8 2005/06/16 06:57:40 jlam Exp $ a11 2 PKG_DESTDIR_SUPPORT= user-destdir @ 1.8 log @Create directories before installing files into them. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.7 2005/05/07 20:55:26 kristerw Exp $ d12 2 d19 1 a19 1 ${INSTALL_PROGRAM} ${WRKSRC}/fastDNAml ${PREFIX}/bin d28 2 a29 1 ${INSTALL_SCRIPT} ${WRKDIR}/${DISTNAME}/scripts/${SCRIPT} ${PREFIX}/bin d31 1 a31 1 ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/fastDNAml d33 2 a34 1 ${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/docs/${DOC} ${PREFIX}/share/doc/fastDNAml @ 1.7 log @Do not add CC to MAKE_FLAGS. This was not quoted correctly, and the pkgsrc infrastructures already adds this anyway. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.6 2004/08/16 23:45:59 ben Exp $ d14 2 @ 1.6 log @Update fastDNAml to version 1.2.2. Notable changes include: * Now under GPL * Convert to function definitions with parameter type lists * General code clean-up @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.5 2004/01/29 13:41:05 grant Exp $ a13 2 MAKE_FLAGS+= CC=${CC} @ 1.5 log @call ${MAKE} with the right environment and arguments, override CC. fixes build with non-gcc. minor style fixes. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.4 2004/01/20 12:08:40 agc Exp $ d3 2 a4 2 DISTNAME= fastDNAml_1.2.1 PKGNAME= fastDNAml-1.2.1 d12 3 a14 13 RESTRICTED= "No commercial distribution without a royalty agreement with the author" NO_SRC_ON_CDROM= ${RESTRICTED} NO_BIN_ON_CDROM= ${RESTRICTED} WRKSRC= ${WRKDIR}/${DISTNAME} ALL_TARGET= fastDNAml MAKE_FLAGS+= CC="${CC}" MAKE_FLAGS+= LDFLAGS=-lm do-build: @@cd ${WRKSRC}/source && \ ${SETENV} ${MAKE_ENV} ${MAKE} ${MAKE_FLAGS} ${ALL_TARGET} d17 1 a17 1 ${INSTALL_PROGRAM} ${WRKSRC}/source/fastDNAml ${PREFIX}/bin d26 1 a26 1 ${INSTALL_SCRIPT} ${WRKSRC}/scripts/${SCRIPT} ${PREFIX}/bin d29 3 a31 2 ${INSTALL_DATA} ${WRKSRC}/docs/fastDNAml_doc_1.2.txt ${PREFIX}/share/doc/fastDNAml ${INSTALL_DATA} ${WRKSRC}/docs/fastDNAml_scripts.txt ${PREFIX}/share/doc/fastDNAml @ 1.4 log @Move WRKSRC definition away from the first paragraph in a Makefile. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.3 2001/02/16 13:41:29 wiz Exp $ d17 1 d19 2 a20 2 do-build : @@ cd ${WRKSRC}/source && ${MAKE} LDFLAGS=-lm fastDNAml d22 5 a26 1 do-install : @ 1.3 log @Update to new COMMENT style: COMMENT var in Makefile instead of pkg/COMMENT. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.2 2000/08/18 22:46:31 hubertf Exp $ a4 1 WRKSRC= ${WRKDIR}/${DISTNAME} d16 2 @ 1.2 log @Replace MIRROR_DISTFILES and NO_CDROM with the more descriptive and more fine-grained NO_{BIN,SRC}_ON_{FTP,CDROM} definitions. MIRROR_DISTFILES and NO_CDROM are now dead. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.1.1.1 1999/07/28 20:18:55 rh Exp $ d11 1 @ 1.1 log @Initial revision @ text @d1 1 a1 1 # $NetBSD$ d12 3 a14 1 NO_CDROM= "No commercial distribution without a royalty agreement with the author" @ 1.1.1.1 log @Import of fastDNAml-1.2.1, a program for estimating maximum likelihood phylogenetic trees from nucleotide sequences, as submitted by Marc Baudoin, thanks! @ text @@