head 1.12; access; symbols pkgsrc-2023Q4:1.12.0.22 pkgsrc-2023Q4-base:1.12 pkgsrc-2023Q3:1.12.0.20 pkgsrc-2023Q3-base:1.12 pkgsrc-2023Q2:1.12.0.18 pkgsrc-2023Q2-base:1.12 pkgsrc-2023Q1:1.12.0.16 pkgsrc-2023Q1-base:1.12 pkgsrc-2022Q4:1.12.0.14 pkgsrc-2022Q4-base:1.12 pkgsrc-2022Q3:1.12.0.12 pkgsrc-2022Q3-base:1.12 pkgsrc-2022Q2:1.12.0.10 pkgsrc-2022Q2-base:1.12 pkgsrc-2022Q1:1.12.0.8 pkgsrc-2022Q1-base:1.12 pkgsrc-2021Q4:1.12.0.6 pkgsrc-2021Q4-base:1.12 pkgsrc-2021Q3:1.12.0.4 pkgsrc-2021Q3-base:1.12 pkgsrc-2021Q2:1.12.0.2 pkgsrc-2021Q2-base:1.12 pkgsrc-2021Q1:1.11.0.30 pkgsrc-2021Q1-base:1.11 pkgsrc-2020Q4:1.11.0.28 pkgsrc-2020Q4-base:1.11 pkgsrc-2020Q3:1.11.0.26 pkgsrc-2020Q3-base:1.11 pkgsrc-2020Q2:1.11.0.22 pkgsrc-2020Q2-base:1.11 pkgsrc-2020Q1:1.11.0.2 pkgsrc-2020Q1-base:1.11 pkgsrc-2019Q4:1.11.0.24 pkgsrc-2019Q4-base:1.11 pkgsrc-2019Q3:1.11.0.20 pkgsrc-2019Q3-base:1.11 pkgsrc-2019Q2:1.11.0.18 pkgsrc-2019Q2-base:1.11 pkgsrc-2019Q1:1.11.0.16 pkgsrc-2019Q1-base:1.11 pkgsrc-2018Q4:1.11.0.14 pkgsrc-2018Q4-base:1.11 pkgsrc-2018Q3:1.11.0.12 pkgsrc-2018Q3-base:1.11 pkgsrc-2018Q2:1.11.0.10 pkgsrc-2018Q2-base:1.11 pkgsrc-2018Q1:1.11.0.8 pkgsrc-2018Q1-base:1.11 pkgsrc-2017Q4:1.11.0.6 pkgsrc-2017Q4-base:1.11 pkgsrc-2017Q3:1.11.0.4 pkgsrc-2017Q3-base:1.11 pkgsrc-2017Q2:1.10.0.14 pkgsrc-2017Q2-base:1.10 pkgsrc-2017Q1:1.10.0.12 pkgsrc-2017Q1-base:1.10 pkgsrc-2016Q4:1.10.0.10 pkgsrc-2016Q4-base:1.10 pkgsrc-2016Q3:1.10.0.8 pkgsrc-2016Q3-base:1.10 pkgsrc-2016Q2:1.10.0.6 pkgsrc-2016Q2-base:1.10 pkgsrc-2016Q1:1.10.0.4 pkgsrc-2016Q1-base:1.10 pkgsrc-2015Q4:1.10.0.2 pkgsrc-2015Q4-base:1.10 pkgsrc-2015Q3:1.9.0.26 pkgsrc-2015Q3-base:1.9 pkgsrc-2015Q2:1.9.0.24 pkgsrc-2015Q2-base:1.9 pkgsrc-2015Q1:1.9.0.22 pkgsrc-2015Q1-base:1.9 pkgsrc-2014Q4:1.9.0.20 pkgsrc-2014Q4-base:1.9 pkgsrc-2014Q3:1.9.0.18 pkgsrc-2014Q3-base:1.9 pkgsrc-2014Q2:1.9.0.16 pkgsrc-2014Q2-base:1.9 pkgsrc-2014Q1:1.9.0.14 pkgsrc-2014Q1-base:1.9 pkgsrc-2013Q4:1.9.0.12 pkgsrc-2013Q4-base:1.9 pkgsrc-2013Q3:1.9.0.10 pkgsrc-2013Q3-base:1.9 pkgsrc-2013Q2:1.9.0.8 pkgsrc-2013Q2-base:1.9 pkgsrc-2013Q1:1.9.0.6 pkgsrc-2013Q1-base:1.9 pkgsrc-2012Q4:1.9.0.4 pkgsrc-2012Q4-base:1.9 pkgsrc-2012Q3:1.9.0.2 pkgsrc-2012Q3-base:1.9 pkgsrc-2012Q2:1.8.0.26 pkgsrc-2012Q2-base:1.8 pkgsrc-2012Q1:1.8.0.24 pkgsrc-2012Q1-base:1.8 pkgsrc-2011Q4:1.8.0.22 pkgsrc-2011Q4-base:1.8 pkgsrc-2011Q3:1.8.0.20 pkgsrc-2011Q3-base:1.8 pkgsrc-2011Q2:1.8.0.18 pkgsrc-2011Q2-base:1.8 pkgsrc-2011Q1:1.8.0.16 pkgsrc-2011Q1-base:1.8 pkgsrc-2010Q4:1.8.0.14 pkgsrc-2010Q4-base:1.8 pkgsrc-2010Q3:1.8.0.12 pkgsrc-2010Q3-base:1.8 pkgsrc-2010Q2:1.8.0.10 pkgsrc-2010Q2-base:1.8 pkgsrc-2010Q1:1.8.0.8 pkgsrc-2010Q1-base:1.8 pkgsrc-2009Q4:1.8.0.6 pkgsrc-2009Q4-base:1.8 pkgsrc-2009Q3:1.8.0.4 pkgsrc-2009Q3-base:1.8 pkgsrc-2009Q2:1.8.0.2 pkgsrc-2009Q2-base:1.8 pkgsrc-2009Q1:1.7.0.14 pkgsrc-2009Q1-base:1.7 pkgsrc-2008Q4:1.7.0.12 pkgsrc-2008Q4-base:1.7 pkgsrc-2008Q3:1.7.0.10 pkgsrc-2008Q3-base:1.7 cube-native-xorg:1.7.0.8 cube-native-xorg-base:1.7 pkgsrc-2008Q2:1.7.0.6 pkgsrc-2008Q2-base:1.7 cwrapper:1.7.0.4 pkgsrc-2008Q1:1.7.0.2 pkgsrc-2008Q1-base:1.7 pkgsrc-2007Q4:1.6.0.22 pkgsrc-2007Q4-base:1.6 pkgsrc-2007Q3:1.6.0.20 pkgsrc-2007Q3-base:1.6 pkgsrc-2007Q2:1.6.0.18 pkgsrc-2007Q2-base:1.6 pkgsrc-2007Q1:1.6.0.16 pkgsrc-2007Q1-base:1.6 pkgsrc-2006Q4:1.6.0.14 pkgsrc-2006Q4-base:1.6 pkgsrc-2006Q3:1.6.0.12 pkgsrc-2006Q3-base:1.6 pkgsrc-2006Q2:1.6.0.10 pkgsrc-2006Q2-base:1.6 pkgsrc-2006Q1:1.6.0.8 pkgsrc-2006Q1-base:1.6 pkgsrc-2005Q4:1.6.0.6 pkgsrc-2005Q4-base:1.6 pkgsrc-2005Q3:1.6.0.4 pkgsrc-2005Q3-base:1.6 pkgsrc-2005Q2:1.6.0.2 pkgsrc-2005Q2-base:1.6 pkgsrc-2005Q1:1.4.0.4 pkgsrc-2005Q1-base:1.4 pkgsrc-2004Q4:1.4.0.2 pkgsrc-2004Q4-base:1.4 pkgsrc-2004Q3:1.3.0.4 pkgsrc-2004Q3-base:1.3 pkgsrc-2004Q2:1.3.0.2 pkgsrc-2004Q2-base:1.3 pkgsrc-2004Q1:1.2.0.2 pkgsrc-2004Q1-base:1.2 pkgsrc-2003Q4:1.1.1.1.0.2 pkgsrc-2003Q4-base:1.1.1.1 pkgsrc-base:1.1.1.1 TNF:1.1.1; locks; strict; comment @# @; 1.12 date 2021.04.21.09.12.23; author wiz; state Exp; branches; next 1.11; commitid oDzh3p7RMeqwK8QC; 1.11 date 2017.08.01.17.40.09; author wiz; state Exp; branches; next 1.10; commitid VwwSOHftA5Q2fx1A; 1.10 date 2015.11.07.21.06.37; author dholland; state Exp; branches; next 1.9; commitid TUfuSoh7UMvhJcIy; 1.9 date 2012.09.11.20.32.11; author asau; state Exp; branches; next 1.8; 1.8 date 2009.05.16.22.15.57; author zafer; state Exp; branches; next 1.7; 1.7 date 2008.03.03.01.10.05; author jlam; state Exp; branches; next 1.6; 1.6 date 2005.06.16.06.57.40; author jlam; state Exp; branches; next 1.5; 1.5 date 2005.04.11.21.45.00; author tv; state Exp; branches; next 1.4; 1.4 date 2004.12.03.15.14.51; author wiz; state Exp; branches; next 1.3; 1.3 date 2004.04.11.03.52.59; author snj; state Exp; branches; next 1.2; 1.2 date 2004.01.20.12.08.40; author agc; state Exp; branches; next 1.1; 1.1 date 2003.09.30.01.03.56; author jschauma; state Exp; branches 1.1.1.1; next ; 1.1.1.1 date 2003.09.30.01.03.56; author jschauma; state Exp; branches; next ; desc @@ 1.12 log @*: remove dead download locations @ text @# $NetBSD: Makefile,v 1.11 2017/08/01 17:40:09 wiz Exp $ DISTNAME= coalesce1.5b PKGNAME= coalesce-1.5.0.2 PKGREVISION= 1 CATEGORIES= biology #MASTER_SITES= http://evolution.genetics.washington.edu/lamarc/coalesce/ MAINTAINER= brook@@nmsu.edu #HOMEPAGE= http://evolution.genetics.washington.edu/lamarc/coalesce.html COMMENT= Estimates effective population size and mutation rate WRKSRC= ${WRKDIR}/coalesce1.5beta BUILD_TARGET= coalesce DOCDIR= ${PREFIX}/share/doc/coalesce EXDIR= ${PREFIX}/share/examples/coalesce DOCFILES= coalesce.doc errors.doc readme EXFILES= bestree infile intree outfile parmfile seedfile INSTALLATION_DIRS= bin do-install: ${INSTALL_DATA_DIR} ${DESTDIR}${DOCDIR} ${INSTALL_DATA_DIR} ${DESTDIR}${EXDIR} ${INSTALL_PROGRAM} ${WRKSRC}/coalesce ${DESTDIR}${PREFIX}/bin for f in ${DOCFILES}; do \ ${INSTALL_DATA} ${WRKSRC}/$$f ${DESTDIR}${DOCDIR}/$$f; \ done for f in ${EXFILES}; do \ ${INSTALL_DATA} ${WRKSRC}/$$f ${DESTDIR}${EXDIR}/$$f; \ done .include "../../mk/bsd.pkg.mk" @ 1.11 log @Comment out some dead HOMEPAGEs. @ text @d1 1 a1 2 # $NetBSD: Makefile,v 1.10 2015/11/07 21:06:37 dholland Exp $ # d7 1 a7 1 MASTER_SITES= http://evolution.genetics.washington.edu/lamarc/coalesce/ @ 1.10 log @gets() considered harmful. What is this, 1985? Fixes the build on OpenBSD. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.9 2012/09/11 20:32:11 asau Exp $ d11 1 a11 1 HOMEPAGE= http://evolution.genetics.washington.edu/lamarc/coalesce.html @ 1.9 log @"user-destdir" is default these days @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.8 2009/05/16 22:15:57 zafer Exp $ d6 1 @ 1.8 log @update master site. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.7 2008/03/03 01:10:05 jlam Exp $ a12 2 PKG_DESTDIR_SUPPORT= user-destdir @ 1.7 log @Mechanical changes to add full DESTDIR support to packages that install their files via a custom do-install target. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.6 2005/06/16 06:57:40 jlam Exp $ d7 1 a7 1 MASTER_SITES= ftp://evolution.genetics.washington.edu/pub/lamarc/coalesce/ @ 1.6 log @Create directories before installing files into them. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.5 2005/04/11 21:45:00 tv Exp $ d13 2 d26 5 a30 5 ${INSTALL_DATA_DIR} ${DOCDIR} ${INSTALL_DATA_DIR} ${EXDIR} ${INSTALL_PROGRAM} ${WRKSRC}/coalesce ${PREFIX}/bin/ for f in ${DOCFILES}; do \ ${INSTALL_DATA} ${WRKSRC}/$$f ${DOCDIR}/$$f; \ d32 2 a33 2 for f in ${EXFILES}; do \ ${INSTALL_DATA} ${WRKSRC}/$$f ${EXDIR}/$$f; \ @ 1.5 log @Remove USE_BUILDLINK3 and NO_BUILDLINK; these are no longer used. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.4 2004/12/03 15:14:51 wiz Exp $ d21 2 @ 1.4 log @Rename ALL_TARGET to BUILD_TARGET for consistency with other *_TARGETs. Suggested by Roland Illig, ok'd by various. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.3 2004/04/11 03:52:59 snj Exp $ a13 1 USE_BUILDLINK3= YES @ 1.3 log @Convert to buildlink3. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.2 2004/01/20 12:08:40 agc Exp $ d15 1 a15 1 ALL_TARGET= coalesce @ 1.2 log @Move WRKSRC definition away from the first paragraph in a Makefile. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.1.1.1 2003/09/30 01:03:56 jschauma Exp $ d14 1 a14 1 USE_BUILDLINK2= YES @ 1.1 log @Initial revision @ text @d1 1 a1 1 # $NetBSD$ a5 1 WRKSRC= ${WRKDIR}/coalesce1.5beta d13 1 @ 1.1.1.1 log @Initial import of coalesce, one of the many packages provided by brook at biology dot nmsu dot edu and his team at NMSU. COALESCE fits the model which has a single population of constant size, and estimates 4Nu, where N is the effective population size and u is the neutral mutation rate per site. @ text @@