head 1.9; access; symbols pkgsrc-2023Q4:1.9.0.6 pkgsrc-2023Q4-base:1.9 pkgsrc-2023Q3:1.9.0.4 pkgsrc-2023Q3-base:1.9 pkgsrc-2023Q2:1.9.0.2 pkgsrc-2023Q2-base:1.9 pkgsrc-2023Q1:1.8.0.12 pkgsrc-2023Q1-base:1.8 pkgsrc-2022Q4:1.8.0.10 pkgsrc-2022Q4-base:1.8 pkgsrc-2022Q3:1.8.0.8 pkgsrc-2022Q3-base:1.8 pkgsrc-2022Q2:1.8.0.6 pkgsrc-2022Q2-base:1.8 pkgsrc-2022Q1:1.8.0.4 pkgsrc-2022Q1-base:1.8 pkgsrc-2021Q4:1.8.0.2 pkgsrc-2021Q4-base:1.8 pkgsrc-2021Q3:1.6.0.32 pkgsrc-2021Q3-base:1.6 pkgsrc-2021Q2:1.6.0.30 pkgsrc-2021Q2-base:1.6 pkgsrc-2021Q1:1.6.0.28 pkgsrc-2021Q1-base:1.6 pkgsrc-2020Q4:1.6.0.26 pkgsrc-2020Q4-base:1.6 pkgsrc-2020Q3:1.6.0.24 pkgsrc-2020Q3-base:1.6 pkgsrc-2020Q2:1.6.0.22 pkgsrc-2020Q2-base:1.6 pkgsrc-2020Q1:1.6.0.18 pkgsrc-2020Q1-base:1.6 pkgsrc-2019Q4:1.6.0.20 pkgsrc-2019Q4-base:1.6 pkgsrc-2019Q3:1.6.0.16 pkgsrc-2019Q3-base:1.6 pkgsrc-2019Q2:1.6.0.14 pkgsrc-2019Q2-base:1.6 pkgsrc-2019Q1:1.6.0.12 pkgsrc-2019Q1-base:1.6 pkgsrc-2018Q4:1.6.0.10 pkgsrc-2018Q4-base:1.6 pkgsrc-2018Q3:1.6.0.8 pkgsrc-2018Q3-base:1.6 pkgsrc-2018Q2:1.6.0.6 pkgsrc-2018Q2-base:1.6 pkgsrc-2018Q1:1.6.0.4 pkgsrc-2018Q1-base:1.6 pkgsrc-2017Q4:1.6.0.2 pkgsrc-2017Q4-base:1.6 pkgsrc-2017Q3:1.4.0.8 pkgsrc-2017Q3-base:1.4 pkgsrc-2017Q2:1.4.0.4 pkgsrc-2017Q2-base:1.4 pkgsrc-2017Q1:1.4.0.2 pkgsrc-2017Q1-base:1.4 pkgsrc-2016Q4:1.3.0.10 pkgsrc-2016Q4-base:1.3 pkgsrc-2016Q3:1.3.0.8 pkgsrc-2016Q3-base:1.3 pkgsrc-2016Q2:1.3.0.6 pkgsrc-2016Q2-base:1.3 pkgsrc-2016Q1:1.3.0.4 pkgsrc-2016Q1-base:1.3 pkgsrc-2015Q4:1.3.0.2 pkgsrc-2015Q4-base:1.3; locks; strict; comment @# @; 1.9 date 2023.05.18.14.05.15; author bacon; state Exp; branches; next 1.8; commitid 5x9aSLlLk5t62spE; 1.8 date 2021.10.26.10.03.37; author nia; state Exp; branches; next 1.7; commitid R64ULQLy8JYkZieD; 1.7 date 2021.10.07.13.19.37; author nia; state Exp; branches; next 1.6; commitid CQ422EVgQgYxGSbD; 1.6 date 2017.12.27.23.44.01; author he; state Exp; branches; next 1.5; commitid lUG1BIjHdEgQuAkA; 1.5 date 2017.12.17.14.30.36; author bacon; state Exp; branches; next 1.4; commitid bREpyF04m2L2KfjA; 1.4 date 2017.02.14.21.34.34; author joerg; state Exp; branches; next 1.3; commitid SpywW5wxWnIhWXFz; 1.3 date 2015.12.12.16.56.04; author wiedi; state Exp; branches; next 1.2; commitid ZWCFwbSzmY7GdGMy; 1.2 date 2015.11.02.18.42.20; author agc; state Exp; branches; next 1.1; commitid QWWynLrDLYuI4yHy; 1.1 date 2015.10.14.17.12.52; author leot; state Exp; branches; next ; commitid w9ukiN7BcbUAc6Fy; desc @@ 1.9 log @biology/bwa: Add support for aarch64 via devel/simde May also work on other 64-bit architectures, but untested @ text @$NetBSD: distinfo,v 1.8 2021/10/26 10:03:37 nia Exp $ BLAKE2s (bwa-0.7.17.tar.gz) = be24abe7b59b3fddc3360344657c0ea38c1475aa86b9fd1729479f2bd927016d SHA512 (bwa-0.7.17.tar.gz) = 114e61b7cc5edcb67172d1eca7be1fa670ea33dd48b5c02c98318e254871363775c0dab327fd7ee7023200a5fedc745fa01cbe0fd9550d783f091d4df6926f48 Size (bwa-0.7.17.tar.gz) = 232593 bytes SHA1 (patch-Makefile) = 5da1b5453cc4c173e1bc01e37704685357b7a6c9 SHA1 (patch-kopen.c) = 092cc6c83904aaab737ca6049ea9ee358149a2d7 SHA1 (patch-ksw.c) = 2e7c655a40b485db99f4f8a7f844078b0065f572 @ 1.8 log @biology: Replace RMD160 checksums with BLAKE2s checksums All checksums have been double-checked against existing RMD160 and SHA512 hashes @ text @d1 1 a1 1 $NetBSD: distinfo,v 1.7 2021/10/07 13:19:37 nia Exp $ d6 3 a8 2 SHA1 (patch-Makefile) = 72ac08d92540a88da08bf4d988ca3f6132327a6a SHA1 (patch-kopen.c) = ecc92efa3ebe4da484aa6760e23de9437b000644 @ 1.7 log @biology: Remove SHA1 hashes for distfiles @ text @d1 1 a1 1 $NetBSD: distinfo,v 1.6 2017/12/27 23:44:01 he Exp $ d3 1 a3 1 RMD160 (bwa-0.7.17.tar.gz) = d26a266387dee4fc9fcf6eef4f7ffcc076495c22 @ 1.6 log @Re-add patch to bring timeval definition and select prototype into scope. Bump PKGREVISION. @ text @d1 1 a1 1 $NetBSD: distinfo,v 1.5 2017/12/17 14:30:36 bacon Exp $ a2 1 SHA1 (bwa-0.7.17.tar.gz) = 77f9aac723110227ea51cb42011336d291d03723 @ 1.5 log @biology/bwa: Update to 0.7.17 Numerous bug fixes, enhancements, and new command-line options ok wiz@@ @ text @d1 1 a1 1 $NetBSD: distinfo,v 1.4 2017/02/14 21:34:34 joerg Exp $ d8 1 @ 1.4 log @Add missing include. @ text @d1 1 a1 1 $NetBSD: distinfo,v 1.3 2015/12/12 16:56:04 wiedi Exp $ d3 5 a7 6 SHA1 (bwa-0.7.9a.tar.bz2) = a77ce327e8acba554b1d27bfdd1c148f79726484 RMD160 (bwa-0.7.9a.tar.bz2) = a51b7c686a206144eab2aee0a372d5ae46fcfce1 SHA512 (bwa-0.7.9a.tar.bz2) = 93804b2c0ac0f675e76f762441e1eec039d7f1cf77b033fd88f2e6c39d9cd4b5c21bba9fb44e34a3dab28c630c3855792a707e5b33109d4be0097cec97eaa686 Size (bwa-0.7.9a.tar.bz2) = 166193 bytes SHA1 (patch-Makefile) = 2bb665cb579d20a07ae7c2be8ba0ed874d60d5b0 SHA1 (patch-kopen.c) = 9c92b812a7e55bf9d7d136d91be02982610d9f51 @ 1.3 log @Fix int types and network libs on SunOS @ text @d1 1 a1 1 $NetBSD: distinfo,v 1.2 2015/11/02 18:42:20 agc Exp $ d8 1 @ 1.2 log @Add SHA512 digests for distfiles for biology category. Existing SHA1 digests verified, all found to be the same on the machine holding the existing distfiles (morden). Existing SHA1 digests retained for now as an audit trail. @ text @d1 1 a1 1 $NetBSD: distinfo,v 1.1 2015/10/14 17:12:52 leot Exp $ d7 1 @ 1.1 log @Import biology/bwa as bwa-0.7.9a. Packaged in pkgsrc-wip by Jason Bacon. BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. @ text @d1 1 a1 1 $NetBSD$ d5 1 @