head 1.8; access; symbols pkgsrc-2023Q4:1.7.0.6 pkgsrc-2023Q4-base:1.7 pkgsrc-2023Q3:1.7.0.4 pkgsrc-2023Q3-base:1.7 pkgsrc-2023Q2:1.7.0.2 pkgsrc-2023Q2-base:1.7 pkgsrc-2023Q1:1.6.0.2 pkgsrc-2023Q1-base:1.6 pkgsrc-2022Q4:1.5.0.2 pkgsrc-2022Q4-base:1.5 pkgsrc-2022Q3:1.4.0.8 pkgsrc-2022Q3-base:1.4 pkgsrc-2022Q2:1.4.0.6 pkgsrc-2022Q2-base:1.4 pkgsrc-2022Q1:1.4.0.4 pkgsrc-2022Q1-base:1.4 pkgsrc-2021Q4:1.4.0.2 pkgsrc-2021Q4-base:1.4 pkgsrc-2021Q3:1.2.0.2 pkgsrc-2021Q3-base:1.2 pkgsrc-2021Q2:1.1.0.16 pkgsrc-2021Q2-base:1.1 pkgsrc-2021Q1:1.1.0.14 pkgsrc-2021Q1-base:1.1 pkgsrc-2020Q4:1.1.0.12 pkgsrc-2020Q4-base:1.1 pkgsrc-2020Q3:1.1.0.10 pkgsrc-2020Q3-base:1.1 pkgsrc-2020Q2:1.1.0.8 pkgsrc-2020Q2-base:1.1 pkgsrc-2020Q1:1.1.0.4 pkgsrc-2020Q1-base:1.1 pkgsrc-2019Q4:1.1.0.6 pkgsrc-2019Q4-base:1.1 pkgsrc-2019Q3:1.1.0.2 pkgsrc-2019Q3-base:1.1; locks; strict; comment @# @; 1.8 date 2024.01.25.22.10.00; author mef; state Exp; branches; next 1.7; commitid Vpx2AEq0ioAoCSVE; 1.7 date 2023.06.13.13.22.54; author mef; state Exp; branches; next 1.6; commitid H0VcRT1oMvRRXMsE; 1.6 date 2023.03.12.05.11.37; author mef; state Exp; branches; next 1.5; commitid xAMwrWH1kmYKeNgE; 1.5 date 2022.12.18.11.46.11; author mef; state Exp; branches; next 1.4; commitid UwWqHRr2nV0x726E; 1.4 date 2021.10.26.10.55.25; author nia; state Exp; branches; next 1.3; commitid vzl6zVlmjiF3hjeD; 1.3 date 2021.10.07.14.27.48; author nia; state Exp; branches; next 1.2; commitid wLkpKfebF6VS3TbD; 1.2 date 2021.08.28.05.30.45; author mef; state Exp; branches; next 1.1; commitid e3wkyj0hsftjnH6D; 1.1 date 2019.08.09.15.50.05; author brook; state Exp; branches; next ; commitid AjBSX4Y7ULGsUmyB; desc @@ 1.8 log @(math/R-compositions) Updated 2.0.6 to 2.0.7, make test fails Version 2.0-7 * test result files stored as requested by cran standards @ text @$NetBSD: distinfo,v 1.7 2023/06/13 13:22:54 mef Exp $ BLAKE2s (R/compositions_2.0-7.tar.gz) = 007cafe42088d614fd4f9768f618b2ca061f14e6c1793da35e7281e83194425d SHA512 (R/compositions_2.0-7.tar.gz) = 6e466b35707257bf15d8121346a00a396fe9b3d7d157462f146936858411597cda03efa8ab0d9f0e4a0046bb4ef65183d45bc15480a717d922ebeabaac680587 Size (R/compositions_2.0-7.tar.gz) = 3073825 bytes @ 1.7 log @(math/R-compositions) Updated 2.0.5 to 2.0.6 Version 2.0-6 * All .C() calls include symbols and not string names of the called C routines @ text @d1 1 a1 1 $NetBSD: distinfo,v 1.6 2023/03/12 05:11:37 mef Exp $ d3 3 a5 3 BLAKE2s (R/compositions_2.0-6.tar.gz) = 4c0cde4aa82ca04d780863dc788129d739750de180e191b5cbece21f2a67c727 SHA512 (R/compositions_2.0-6.tar.gz) = 27326e038ace93a374bd38ce02c3fab34f3554793ea2211d367720b72d4ef802e176e7a548357f321f8a8a62c2b3c664cc60c16314a3773c1d7768c0924933b1 Size (R/compositions_2.0-6.tar.gz) = 1176606 bytes @ 1.6 log @(math/R-compositions) Updated 2.0.4 to 2.0.5 Version 2.0-5 * Adapted to new rgl 1.0.1 interface @ text @d1 1 a1 1 $NetBSD: distinfo,v 1.5 2022/12/18 11:46:11 mef Exp $ d3 3 a5 3 BLAKE2s (R/compositions_2.0-5.tar.gz) = 7220c703cec15a1e898bf6b1082f2f27ce1d755c98d5a893616fa5536e1f96be SHA512 (R/compositions_2.0-5.tar.gz) = 8917e9b2b68643cbf42789e8aa8ba18dea7aeae2ebbaa9f66acb2eca223cfd1f16cd0fb99cc596e490e619bd3969edf3034162981eb0aa4d07f529ee3c0128b6 Size (R/compositions_2.0-5.tar.gz) = 1175883 bytes @ 1.5 log @(math/R-compositions) Updated 2.0.2 to 2.0.4 Version 2.0-4 * F77_ calling conventions adapted from fixed length strings to length parameter in BLAS calls * fitDirichlet returned loglikehood fixed (by adding a "-" in front of n) * as.matrix.rmult method returns now a matrix with the rmult class stripped; in this way, derivate functions of `lm()` work properly (e.g. `anova`, `summary.manova`, `MASS::lda`) Version 2.0-3 * kernel density estimation on the simplex with Dirichlet kernels (kdeDirichlet) Version 2.0-2.9000 * own implementation of dDirichlet @ text @d1 1 a1 1 $NetBSD: distinfo,v 1.4 2021/10/26 10:55:25 nia Exp $ d3 3 a5 3 BLAKE2s (R/compositions_2.0-4.tar.gz) = 655e6d6c12957d129682377e0ab09a933e2f5022dfb41d05492a2c20fec28c25 SHA512 (R/compositions_2.0-4.tar.gz) = 5ccba3ce12461ff3d7fdda8e2956ed2eaed6a029911a31c11c375c40c1b2696b3601d62a07b07f7695b408181b286be251e5530d2934249d1586024c1ea92944 Size (R/compositions_2.0-4.tar.gz) = 1175066 bytes @ 1.4 log @math: Replace RMD160 checksums with BLAKE2s checksums All checksums have been double-checked against existing RMD160 and SHA512 hashes @ text @d1 1 a1 1 $NetBSD: distinfo,v 1.3 2021/10/07 14:27:48 nia Exp $ d3 3 a5 3 BLAKE2s (R/compositions_2.0-2.tar.gz) = 9cb6cc8c8fd38069695893257878fb7d5e6e7a640b60dc296b9e8fcfd6b2c379 SHA512 (R/compositions_2.0-2.tar.gz) = f3484aeba165891a39cec95d5eb700d475e71f7bde063bc223fb88642b582897599a4480c75cbc43722437fd907a6565f1a58694f4b99a37d676d4cda5a5c867 Size (R/compositions_2.0-2.tar.gz) = 1168643 bytes @ 1.3 log @math: Remove SHA1 hashes for distfiles @ text @d1 1 a1 1 $NetBSD: distinfo,v 1.2 2021/08/28 05:30:45 mef Exp $ d3 1 a3 1 RMD160 (R/compositions_2.0-2.tar.gz) = deae014cd47a693ce9d42c3e769916c8bcbfb524 @ 1.2 log @(math/R-compositions) Updated 1.40.2 to 2.0.2 Version 2.0-1.9001 Minor changes / Bugfixes: * functions that do not work with sticky classes are now wrapped (e.g. `anova()`) Version 2.0-1.9000 Major change: sticky classes! Now objects of compositional classes do not miss their class when subsetting. For example, if `x` is an "acomp" object, x[1:2,] will also be an "acomp" object. Selection of columns work as well, but it is a bit more tricky. Check ?`[.acomp` for details. You can get skip this behaviour by setting setStickyClassOption(FALSE). The dollar notation `$` also works! Added: * Limited support for using compositions classes as formal S4 classes, for instance in slots of S4 classes expecting a "data.frame" or a "structure" (matrix or array). * self-invertibility: now "rmult" objects created by any transformation (cdt, clr, cpt, idt, ilr, ipt, iit, ilt, alr, apt) remember the original data and the transformation between them, and can be back-transformed with `backtransform`. * added cdt and idt methods for objects of class "factor" (returning the contrasts and their ipt transformation), and for "data.frame" objects (exploiting the attribute "origClass" if they have it). * `pwlr()`: pairwise logratio transformation (and inverse: `pwlrInv()`) * `pwlrPlot()`: pairwise logratio plots vs covariables, both as explained and as explanatory variables. This makes use of the ability of plot(x~y) to react to the nature of `x` and `y` to create scatterplots, boxplots and spineplots. * transformation functions between variation and clrvar: variation2clrvar and clrvar2variation * `split()` methods for compositional classes * new panels for filling `pairs()` plots with boxplots, densities, kde2d-densities, etc...: check ?vp.kde2dplot Minor Changes: * the function to fit linear models of coregionalisation is now called `fit.lmc()`; use full name specification with it! `compositions::fit.lmc()` Bugfixes: * bug in subsetting of one-column rmult object corected @ text @d1 1 a1 1 $NetBSD: distinfo,v 1.1 2019/08/09 15:50:05 brook Exp $ a2 1 SHA1 (R/compositions_2.0-2.tar.gz) = 07aef5c2a57d7728870fe5a266090cbe8c7c31d8 @ 1.1 log @R-compositions: initial commit Provides functions for the consistent analysis of compositional data (e.g. portions of substances) and positive numbers (e.g. concentrations) in the way proposed by J. Aitchison and V. Pawlowsky-Glahn. @ text @d1 1 a1 1 $NetBSD$ d3 4 a6 4 SHA1 (R/compositions_1.40-2.tar.gz) = 8fe5f70401f4a4daf44c649e210f5f9bd663c270 RMD160 (R/compositions_1.40-2.tar.gz) = dff95b6b41104b17a9f50b9fbf6c9b3482e8b324 SHA512 (R/compositions_1.40-2.tar.gz) = c5b39eb71dbfadae3a4dccb9f19309ccc3297be39a5ab1ce63e50317a64b0beb7e62d3e1edaf9cb2cf33b0cd00ef27fadb5c442d62eb24eaf04cc304265bec12 Size (R/compositions_1.40-2.tar.gz) = 792954 bytes @