head 1.9; access; symbols pkgsrc-2023Q4:1.9.0.2 pkgsrc-2023Q4-base:1.9 pkgsrc-2023Q3:1.8.0.12 pkgsrc-2023Q3-base:1.8 pkgsrc-2023Q2:1.8.0.10 pkgsrc-2023Q2-base:1.8 pkgsrc-2023Q1:1.8.0.8 pkgsrc-2023Q1-base:1.8 pkgsrc-2022Q4:1.8.0.6 pkgsrc-2022Q4-base:1.8 pkgsrc-2022Q3:1.8.0.4 pkgsrc-2022Q3-base:1.8 pkgsrc-2022Q2:1.8.0.2 pkgsrc-2022Q2-base:1.8 pkgsrc-2022Q1:1.7.0.2 pkgsrc-2022Q1-base:1.7 pkgsrc-2021Q4:1.6.0.2 pkgsrc-2021Q4-base:1.6 pkgsrc-2021Q3:1.3.0.2 pkgsrc-2021Q3-base:1.3 pkgsrc-2021Q2:1.2.0.2 pkgsrc-2021Q2-base:1.2 pkgsrc-2021Q1:1.1.0.2 pkgsrc-2021Q1-base:1.1; locks; strict; comment @# @; 1.9 date 2023.10.28.20.41.05; author bacon; state Exp; branches; next 1.8; commitid TdFSU9o6K0IiZqKE; 1.8 date 2022.06.11.19.50.59; author bacon; state Exp; branches; next 1.7; commitid m3DTIFBroz9lUEHD; 1.7 date 2022.03.15.21.13.46; author bacon; state Exp; branches; next 1.6; commitid OedKcvEMOKYgcmwD; 1.6 date 2021.12.14.19.12.10; author bacon; state Exp; branches; next 1.5; commitid ZodUwcC4wUDLrEkD; 1.5 date 2021.10.26.10.03.44; author nia; state Exp; branches; next 1.4; commitid R64ULQLy8JYkZieD; 1.4 date 2021.10.07.13.19.43; author nia; state Exp; branches; next 1.3; commitid CQ422EVgQgYxGSbD; 1.3 date 2021.08.28.18.40.06; author bacon; state Exp; branches; next 1.2; commitid vseZS8L08Fh9KL6D; 1.2 date 2021.06.11.17.09.40; author bacon; state Exp; branches; next 1.1; commitid tknty727ygzoKJWC; 1.1 date 2021.03.24.18.22.53; author bacon; state Exp; branches; next ; commitid RiOZlV7k6AJcHAMC; desc @@ 1.9 log @biology/vcf2hap: Update to 0.1.6.7 Updates for new libxtend API @ text @$NetBSD$ BLAKE2s (vcf2hap-0.1.6.7-2cc4a97bb3b08e1c336578b36af5970ce98c931a.tar.gz) = 66fde28214ca9dfd9833d178893c414c607d881fcafd368191034dc9dab34f3b SHA512 (vcf2hap-0.1.6.7-2cc4a97bb3b08e1c336578b36af5970ce98c931a.tar.gz) = 921b4272c7523803831f3d16879eeea4ce5e3903c9ff69596aa6b3eb94b61df8ab4b1b0f03e7b904749ae3579e6f9cf364edfb998c22bf839a766c0de3654aa9 Size (vcf2hap-0.1.6.7-2cc4a97bb3b08e1c336578b36af5970ce98c931a.tar.gz) = 201287 bytes @ 1.8 log @biology/vcf2hap: Update to 0.1.6 Update for bl_vcf_t API streamlining Changes: https://github.com/auerlab/vcf2hap/releases @ text @d3 3 a5 3 BLAKE2s (vcf2hap-0.1.6.tar.gz) = f596d4092ef4867c4254698d1fb21396c169ea77beb38c3a324bad39b0fbb0f4 SHA512 (vcf2hap-0.1.6.tar.gz) = c221b704b54872414cd41624b70d4c4fd59546519b13e7c11fe27e7608db6a57915d56a7933ddb639f4828fe9ad8e4514336eb48160cc2fc697791c245dcb1cd Size (vcf2hap-0.1.6.tar.gz) = 201124 bytes @ 1.7 log @biology/vcf2hap: Update to 0.1.5 Minor update for biolibc 0.2.2 API changes @ text @d3 3 a5 3 BLAKE2s (vcf2hap-0.1.5.tar.gz) = ecaa902a7558e5e2cb7c62316c84e8d33324a2f37e1887fa5abbc87d98f49e90 SHA512 (vcf2hap-0.1.5.tar.gz) = 565663126600e42bff61d47aad2b858fcf6bff369c369250a41530092ae65aae4aac8abdf5d6e85637fed103fbfb974850fce9a1782b04a91f67209ffb25901a Size (vcf2hap-0.1.5.tar.gz) = 201128 bytes @ 1.6 log @biology/vcf2hap: Update to 0.1.4 Updates for evolving libxtend and biolibc APIs Add --version flag @ text @d3 3 a5 3 BLAKE2s (vcf2hap-0.1.4.tar.gz) = 7d624c130972b7f78550ad527d3e6829aa382e0d04350e95b0500a10b32871fa SHA512 (vcf2hap-0.1.4.tar.gz) = 2fe7b20f55ba40854d52851a223f1357c3d795860720924b2b8134914361f2e3b396daaacbc9286dc691c83ca144858586f7792d0472c1880c810a11b5c0ee48 Size (vcf2hap-0.1.4.tar.gz) = 200812 bytes @ 1.5 log @biology: Replace RMD160 checksums with BLAKE2s checksums All checksums have been double-checked against existing RMD160 and SHA512 hashes @ text @d1 1 a1 1 $NetBSD: distinfo,v 1.4 2021/10/07 13:19:43 nia Exp $ d3 3 a5 3 BLAKE2s (vcf2hap-0.1.3.12-3626f5a320be8176d359b487682385fa6ab0f197.tar.gz) = 5e788267ecd889c6c9918c7628ce114a5873897a0f2d96fddf5b3d70bb69d0a1 SHA512 (vcf2hap-0.1.3.12-3626f5a320be8176d359b487682385fa6ab0f197.tar.gz) = b97e7fb8bf13f03a90248d8002c46546e0932c1463b6fe4480454b9643de4695ca82f7c49a5ab8ef86e6eb4a931bf6e588334998edfeb29a5fc67b379a927ebb Size (vcf2hap-0.1.3.12-3626f5a320be8176d359b487682385fa6ab0f197.tar.gz) = 200650 bytes @ 1.4 log @biology: Remove SHA1 hashes for distfiles @ text @d1 1 a1 1 $NetBSD: distinfo,v 1.3 2021/08/28 18:40:06 bacon Exp $ d3 1 a3 1 RMD160 (vcf2hap-0.1.3.12-3626f5a320be8176d359b487682385fa6ab0f197.tar.gz) = 3c51d3b48fb88c48793799412aac7115a9b7228b @ 1.3 log @biology/vcf2hap: Update to 0.1.3.12 Updates for libxtend and bioloibc API changes @ text @d1 1 a1 1 $NetBSD$ a2 1 SHA1 (vcf2hap-0.1.3.12-3626f5a320be8176d359b487682385fa6ab0f197.tar.gz) = 1cab0392fb40d2457079a9bf2d8ab5ef0880d499 @ 1.2 log @biology/vcf2hap: Update to 0.1.3 Updates for new biolibc API Upstream change log: https://github.com/auerlab/vcf2hap/releases @ text @d3 4 a6 4 SHA1 (vcf2hap-0.1.3.tar.gz) = 20df7279310b3ca3a22920fe56e1ab9533bae9e6 RMD160 (vcf2hap-0.1.3.tar.gz) = 0907219e943391cd5657b980ee1a54d506762cd4 SHA512 (vcf2hap-0.1.3.tar.gz) = d5dbba976f0e9b6d7b6d3c176780297a87fa4c753b7776fb72024452dfa35ef45e822f974f2825b60836b82d16af267cf3aee11cb7ab8171187fe8977b23a28d Size (vcf2hap-0.1.3.tar.gz) = 198981 bytes @ 1.1 log @biology/vcf2hap: import vcf2hap-0.1.2 vcf2hap is a simple tool for generating a .hap file from a VCF. The .hap file is required by haplohseq. vcf2hap is extremely fast and requires a trivial amount of memory regardless of the size of the VCF file. @ text @d3 4 a6 4 SHA1 (vcf2hap-0.1.2.tar.gz) = a18bc1746ec4df4be88d635c18b0a6b240d2c309 RMD160 (vcf2hap-0.1.2.tar.gz) = a7ec7f863888e005b84f59db7c2787ec19e960de SHA512 (vcf2hap-0.1.2.tar.gz) = 4a4b3c0c63e711f7f9a57706c675bb02f9d55976b6ee3aee1e1d1eeb14f2d92a62ad952e2c03fbe5ab525174b01260b5cb305c9980b48411618bf7e9669ae7f6 Size (vcf2hap-0.1.2.tar.gz) = 197782 bytes @