head 1.10; access; symbols pkgsrc-2023Q4:1.10.0.2 pkgsrc-2023Q4-base:1.10 pkgsrc-2023Q3:1.9.0.8 pkgsrc-2023Q3-base:1.9 pkgsrc-2023Q2:1.9.0.6 pkgsrc-2023Q2-base:1.9 pkgsrc-2023Q1:1.9.0.4 pkgsrc-2023Q1-base:1.9 pkgsrc-2022Q4:1.9.0.2 pkgsrc-2022Q4-base:1.9 pkgsrc-2022Q3:1.8.0.4 pkgsrc-2022Q3-base:1.8 pkgsrc-2022Q2:1.8.0.2 pkgsrc-2022Q2-base:1.8 pkgsrc-2022Q1:1.7.0.2 pkgsrc-2022Q1-base:1.7 pkgsrc-2021Q4:1.6.0.2 pkgsrc-2021Q4-base:1.6 pkgsrc-2021Q3:1.3.0.2 pkgsrc-2021Q3-base:1.3 pkgsrc-2021Q2:1.2.0.2 pkgsrc-2021Q2-base:1.2 pkgsrc-2021Q1:1.1.0.2 pkgsrc-2021Q1-base:1.1; locks; strict; comment @# @; 1.10 date 2023.10.28.20.39.31; author bacon; state Exp; branches; next 1.9; commitid 5dE5WpKA6GtKYqKE; 1.9 date 2022.12.11.21.18.27; author bacon; state Exp; branches; next 1.8; commitid TtDBraKnKLEJvb5E; 1.8 date 2022.06.11.19.46.43; author bacon; state Exp; branches; next 1.7; commitid gis67bMXZyHOSEHD; 1.7 date 2022.03.15.21.12.52; author bacon; state Exp; branches; next 1.6; commitid n6G019AVHuhVbmwD; 1.6 date 2021.12.14.19.10.43; author bacon; state Exp; branches; next 1.5; commitid HB8PGvXMYzDYqEkD; 1.5 date 2021.10.26.10.03.44; author nia; state Exp; branches; next 1.4; commitid R64ULQLy8JYkZieD; 1.4 date 2021.10.07.13.19.43; author nia; state Exp; branches; next 1.3; commitid CQ422EVgQgYxGSbD; 1.3 date 2021.08.28.18.39.37; author bacon; state Exp; branches; next 1.2; commitid 36ZclaSrjO1XJL6D; 1.2 date 2021.06.11.17.22.40; author bacon; state Exp; branches; next 1.1; commitid bjRaIzuax4GPOJWC; 1.1 date 2021.03.24.15.22.29; author bacon; state Exp; branches; next ; commitid ULlhDaIsK6FjHzMC; desc @@ 1.10 log @biology/vcf-split: Update to 0.1.5.10 Updates for new libxtend API @ text @$NetBSD$ BLAKE2s (vcf-split-0.1.5.10-0f2fd0a5051e058b82efd310679265bcda0b5b03.tar.gz) = de4d91fdcb9fe68d942e78f4819bf8a4437ac657d711c4348684f1a590462a59 SHA512 (vcf-split-0.1.5.10-0f2fd0a5051e058b82efd310679265bcda0b5b03.tar.gz) = a6857dbfed03546d216302392b231ce29e7a9e320ceb18b1359bdede655bde2438e9235e109867cf7ba91334e384625bd9df635838f1bc1a156fc04c7819415f Size (vcf-split-0.1.5.10-0f2fd0a5051e058b82efd310679265bcda0b5b03.tar.gz) = 22560 bytes @ 1.9 log @biology/vcf-split: Update to 0.1.5.4 Update for biolibc API changes @ text @d3 3 a5 3 BLAKE2s (vcf-split-0.1.5.4-0a856b934cd483f5c10d93117aab6c7f887204e5.tar.gz) = e0a52c614fdc11e295915fea7bbb84f082866c514b6b151467945489fc453017 SHA512 (vcf-split-0.1.5.4-0a856b934cd483f5c10d93117aab6c7f887204e5.tar.gz) = 5dfb9a3dc1a4fb634962f85ecdfe11346740d46de3399341b5581108e5e4e08b0cae86bf68f60ce9edabdce8651f91d998275d9b520de5dd28b844caba027fa7 Size (vcf-split-0.1.5.4-0a856b934cd483f5c10d93117aab6c7f887204e5.tar.gz) = 22416 bytes @ 1.8 log @biology/vcf-split: Update to 0.1.5 Use latest biolibc API Minor build system improvements https://github.com/auerlab/vcf-split/releases @ text @d3 3 a5 3 BLAKE2s (vcf-split-0.1.5.tar.gz) = 58b6b5b094afd1a5e3c66a06ad23b00a4069dc41c43a8b87abf6ab7d7146d5be SHA512 (vcf-split-0.1.5.tar.gz) = d7e7eb05c292f43f44d484b97293029a16c09261979a0325223742d400e54a3b3aa43b0138e1e42df4d92a7b893b0409ee080350273d5e4c03d580a16397c921 Size (vcf-split-0.1.5.tar.gz) = 22381 bytes @ 1.7 log @biology/vcf-split: Update to 0.1.4 Minor update for biolibc 0.2.2 API changes @ text @d3 3 a5 3 BLAKE2s (vcf-split-0.1.4.tar.gz) = 31b04374f814b3957826456ec6399c94b25ed2da93bcd2b65e77bfa8069b9c93 SHA512 (vcf-split-0.1.4.tar.gz) = 05a8085888c0659e63339a75e4c0b2a7602570e48e4df02df6e4d03f85a4af49d4ca6239175209e2b9b5d4bd8c0a6326b89932560abeca9c25b0fc7dcac48b43 Size (vcf-split-0.1.4.tar.gz) = 22354 bytes @ 1.6 log @biology/vcf-split: Update to 0.1.3.3 Transfer header from multi-sample input Updates for evolving libxtend and biolibc APIs Add --version flag Numerous minor fixes and enhancements @ text @d3 3 a5 3 BLAKE2s (vcf-split-0.1.3.3-19713a4e0f739840335ced2e170b822398688146.tar.gz) = 264396b433ffa50610ff6314b2b8d6c063aadbdb412d7de1066d53f34ed8e912 SHA512 (vcf-split-0.1.3.3-19713a4e0f739840335ced2e170b822398688146.tar.gz) = bc64752c1a021509c40a9aa5229de77c239253be28828b2512fbd5d1be436ab372c052c4411915db8495ca47071e7eda538b35b4278bc37aa5fa440e8caed5a9 Size (vcf-split-0.1.3.3-19713a4e0f739840335ced2e170b822398688146.tar.gz) = 21921 bytes @ 1.5 log @biology: Replace RMD160 checksums with BLAKE2s checksums All checksums have been double-checked against existing RMD160 and SHA512 hashes @ text @d1 1 a1 1 $NetBSD: distinfo,v 1.4 2021/10/07 13:19:43 nia Exp $ d3 3 a5 3 BLAKE2s (vcf-split-0.1.2.14-bc2eba0b5d5f41443795d7bd465569ba5da27315.tar.gz) = 0eb99f0d170977fa72cc6966d6c87cb46a96cf6593af3cbca89005ad518dbe8b SHA512 (vcf-split-0.1.2.14-bc2eba0b5d5f41443795d7bd465569ba5da27315.tar.gz) = fd9481bf9d92967261006bd844b3408f2c33d999a314bd702701da589904bf1322e33723cb26f3753e38a640cc28ffaadabda2ca46a5423c2ac65a020da7aad2 Size (vcf-split-0.1.2.14-bc2eba0b5d5f41443795d7bd465569ba5da27315.tar.gz) = 16161 bytes @ 1.4 log @biology: Remove SHA1 hashes for distfiles @ text @d1 1 a1 1 $NetBSD: distinfo,v 1.3 2021/08/28 18:39:37 bacon Exp $ d3 1 a3 1 RMD160 (vcf-split-0.1.2.14-bc2eba0b5d5f41443795d7bd465569ba5da27315.tar.gz) = 73bca81b9f59b0875de85921be64340e140b729c @ 1.3 log @biology/vcf-split: Update to 0.1.2.14 Updates for libxtend and biolibc API changes @ text @d1 1 a1 1 $NetBSD$ a2 1 SHA1 (vcf-split-0.1.2.14-bc2eba0b5d5f41443795d7bd465569ba5da27315.tar.gz) = 2a68b787928622555d2e766fa05b7ccd1943d3b1 @ 1.2 log @biology/vcf-split: Update to 0.1.2 Updates for new biolibc API Upstream change log: https://github.com/auerlab/vcf-split/releases @ text @d3 4 a6 4 SHA1 (vcf-split-0.1.2.tar.gz) = 6ff5bd12fcbaea6fa6a0afd78cd2978cd5c25beb RMD160 (vcf-split-0.1.2.tar.gz) = 9cf2087943e5869ed6a293c7e420d1f0ed8a85b4 SHA512 (vcf-split-0.1.2.tar.gz) = db0c205e71a3cd07c39bae6d7db65bdfc71ccaf2d6d3c8a1e4a5e13dcbed10052657db48943d7d564ddda2e6dc6feb32223651e06fe6a242c8c7c89056304d60 Size (vcf-split-0.1.2.tar.gz) = 15690 bytes @ 1.1 log @biology/vcf-split: import vcf-split-0.1.1 Vcf-split splits a multi-sample VCF into single-sample VCFs, writing thousands of output files simultaneously. Parsing the TOPMed human chromosome 1 BCF with bcftools takes two days, so extracting the 137,977 samples one at a time or using thousands of parallel readers of the same file is impractical. Vcf-split solves this by generating thousands of single-sample outputs during a single sweep through the multi-sample input. @ text @d3 4 a6 4 SHA1 (vcf-split-0.1.1.tar.gz) = 550fefb4c07d4632405e94127a19e98031ac0067 RMD160 (vcf-split-0.1.1.tar.gz) = 76a1b0b5a8934949d39e69ebe719c8f0ba247a13 SHA512 (vcf-split-0.1.1.tar.gz) = fcc67d287adb9b1f12fb316981ca0b0c06099d8de07113760d198fbcbafb2557ae0d1c202976fae98d6d712a7b802728979d8224354fbaaf65a7872a27d1aa00 Size (vcf-split-0.1.1.tar.gz) = 14226 bytes @