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comment	@# @;


1.1
date	2023.12.23.16.15.02;	author bacon;	state Exp;
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commitid	RqOyJRjbeB8FHBRE;


desc
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1.1
log
@biology/py-macs2: Update to 2.2.9.1

Minor updates from 2.2.8
Add hacks for cython 3 to pkgsrc patches
This is likely the final release of MACS2
MACS3 package is forthcoming
Changes: https://github.com/macs3-project/MACS/releases
@
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@$NetBSD$

# Fix cython 3 error

--- MACS2/IO/CallPeakUnit.pyx.orig	2023-12-23 15:31:06.614325825 +0000
+++ MACS2/IO/CallPeakUnit.pyx
@@@@ -197,7 +197,7 @@@@ cdef wtd_find_summit(chrom, np.ndarray p
     wtd_list = np.zeros( search_end - search_start + 1, dtype="float32")
     i = 0
     for j in range(search_start, search_end+1):
-        wtd_list[i] = max((2 * (watson_left * crick_right)**0.5 - watson_right - crick_left),0) # minimum score is 0
+        wtd_list[i] = max((2 * (watson_left * crick_right)**0.5 - watson_right - crick_left),complex(0)) # minimum score is 0
         watson_left += left_forward(watson, j, window_size)
         watson_right += right_forward(watson, j, window_size)
         crick_left += left_forward(crick, j, window_size)
@