head	1.2;
access;
symbols
	pkgsrc-2013Q2:1.2.0.54
	pkgsrc-2013Q2-base:1.2
	pkgsrc-2012Q4:1.2.0.52
	pkgsrc-2012Q4-base:1.2
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	pkgsrc-2008Q3:1.2.0.42
	pkgsrc-2008Q3-base:1.2
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	pkgsrc-2008Q2-base:1.2
	pkgsrc-2008Q1:1.2.0.36
	pkgsrc-2008Q1-base:1.2
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	pkgsrc-2007Q2:1.2.0.30
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	pkgsrc-2006Q1:1.2.0.20
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	pkgsrc-2005Q3-base:1.2
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	pkgsrc-2005Q2-base:1.2
	pkgsrc-2005Q1:1.2.0.12
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	pkgsrc-2004Q2-base:1.2
	pkgsrc-2004Q1:1.2.0.4
	pkgsrc-2004Q1-base:1.2
	pkgsrc-2003Q4:1.2.0.2
	pkgsrc-2003Q4-base:1.2
	buildlink2-base:1.2
	netbsd-1-5-PATCH001:1.1.1.1
	netbsd-1-5-RELEASE:1.1.1.1
	netbsd-1-4-PATCH003:1.1.1.1
	netbsd-1-4-PATCH002:1.1.1.1
	comdex-fall-1999:1.1.1.1
	pkgsrc-base:1.1.1.1
	TNF:1.1.1;
locks; strict;
comment	@# @;


1.2
date	2001.07.08.13.36.33;	author jtb;	state dead;
branches;
next	1.1;

1.1
date	99.07.28.19.55.17;	author rh;	state Exp;
branches
	1.1.1.1;
next	;

1.1.1.1
date	99.07.28.19.55.17;	author rh;	state Exp;
branches;
next	;


desc
@@


1.2
log
@Update to 5.0.

Among the many changes:

*  New MPI version
*  Now uses autoconf/automake

See the ChangeLog for full details.
@
text
@$NetBSD: patch-ac,v 1.1 1999/07/28 19:55:17 rh Exp $

--- ml1.c.orig	Sun May 23 12:07:15 1999
+++ ml1.c	Sun May 23 12:07:36 1999
@@@@ -65,7 +65,7 @@@@
 }
 
 /* sort site patters of original input data */
-void radixsort(cmatrix seqchar, ivector ali, int maxspc, int maxsite,
+void my_radixsort(cmatrix seqchar, ivector ali, int maxspc, int maxsite,
 	int *numptrn)
 {
 	int i, j, k, l, n, pass;
@@@@ -181,7 +181,7 @@@@
 
 	convfreq(Freqtpm); /* make all frequencies slightly different */
 	ali = new_ivector(Maxsite);
-	radixsort(Seqchar, ali, Maxspc, Maxsite, &Numptrn);
+	my_radixsort(Seqchar, ali, Maxspc, Maxsite, &Numptrn);
 	Seqpat = new_cmatrix(Maxspc, Numptrn);
 	constpat = new_ivector(Numptrn);
 	Weight = new_ivector(Numptrn);
@


1.1
log
@Initial revision
@
text
@d1 1
a1 1
$NetBSD$
@


1.1.1.1
log
@Initial import of puzzle-4.0.2, a maximum likelihood analysis tool of
molecular sequence data
@
text
@@