head	1.3;
access;
symbols
	pkgsrc-2013Q2:1.3.0.54
	pkgsrc-2013Q2-base:1.3
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	pkgsrc-2003Q4-base:1.3
	netbsd-1-6-1:1.2.0.6
	netbsd-1-6-1-base:1.2
	netbsd-1-6:1.2.0.8
	netbsd-1-6-RELEASE-base:1.2
	pkgviews:1.2.0.4
	pkgviews-base:1.2
	buildlink2:1.2.0.2
	buildlink2-base:1.2
	netbsd-1-5-PATCH003:1.2
	netbsd-1-5-PATCH001:1.1.1.1
	netbsd-1-5-RELEASE:1.1.1.1
	netbsd-1-4-PATCH003:1.1.1.1
	netbsd-1-4-PATCH002:1.1.1.1
	comdex-fall-1999:1.1.1.1
	pkgsrc-base:1.1.1.1
	TNF:1.1.1;
locks; strict;
comment	@# @;


1.3
date	2003.05.10.23.46.16;	author jtb;	state dead;
branches;
next	1.2;

1.2
date	2001.07.08.13.36.33;	author jtb;	state Exp;
branches;
next	1.1;

1.1
date	99.07.28.19.55.17;	author rh;	state Exp;
branches
	1.1.1.1;
next	;

1.1.1.1
date	99.07.28.19.55.17;	author rh;	state Exp;
branches;
next	;


desc
@@


1.3
log
@Update to version 5.1.

Many minor enhancements and bugfixes. Manual updated.
@
text
@$NetBSD: patch-aa,v 1.2 2001/07/08 13:36:33 jtb Exp $

--- src/ml.h.orig	Thu May 24 05:12:06 2001
+++ src/ml.h
@@@@ -173,7 +173,7 @@@@
 /* function prototypes of all ml function */
 
 void convfreq(dvector);
-void radixsort(cmatrix, ivector, int, int, int *);
+void my_radixsort(cmatrix, ivector, int, int, int *);
 void condenceseq(cmatrix, ivector, cmatrix, ivector, int, int, int);
 void countconstantsites(cmatrix, ivector, int, int, int *, int*);
 void evaluateseqs(void);
@


1.2
log
@Update to 5.0.

Among the many changes:

*  New MPI version
*  Now uses autoconf/automake

See the ChangeLog for full details.
@
text
@d1 1
a1 1
$NetBSD$
@


1.1
log
@Initial revision
@
text
@d3 4
a6 3
--- makefile.orig	Sun May 23 15:40:28 1999
+++ makefile	Sun May 23 15:40:42 1999
@@@@ -10,11 +10,11 @@@@
d8 6
a13 14
 
 # ANSI C compiler
-CC = gcc
-CFLAGS = -O3 -Wall -pedantic -ansi
+#CC = gcc
+#CFLAGS = -O3 -Wall -pedantic -ansi
 # Comment out for compiler other than gcc
-#CC = cc
-#CFLAGS = -O 
+CC = cc
+CFLAGS = -O 
 
 # ANSI math library
 LIBFLAGS = -lm
@


1.1.1.1
log
@Initial import of puzzle-4.0.2, a maximum likelihood analysis tool of
molecular sequence data
@
text
@@