head	1.11;
access;
symbols
	pkgsrc-2026Q1:1.11.0.12
	pkgsrc-2026Q1-base:1.11
	pkgsrc-2025Q4:1.11.0.10
	pkgsrc-2025Q4-base:1.11
	pkgsrc-2025Q3:1.11.0.8
	pkgsrc-2025Q3-base:1.11
	pkgsrc-2025Q2:1.11.0.6
	pkgsrc-2025Q2-base:1.11
	pkgsrc-2025Q1:1.11.0.4
	pkgsrc-2025Q1-base:1.11
	pkgsrc-2024Q4:1.11.0.2
	pkgsrc-2024Q4-base:1.11
	pkgsrc-2024Q3:1.10.0.8
	pkgsrc-2024Q3-base:1.10
	pkgsrc-2024Q2:1.10.0.6
	pkgsrc-2024Q2-base:1.10
	pkgsrc-2024Q1:1.10.0.4
	pkgsrc-2024Q1-base:1.10
	pkgsrc-2023Q4:1.10.0.2
	pkgsrc-2023Q4-base:1.10
	pkgsrc-2023Q3:1.9.0.2
	pkgsrc-2023Q3-base:1.9
	pkgsrc-2023Q2:1.8.0.2
	pkgsrc-2023Q2-base:1.8
	pkgsrc-2023Q1:1.7.0.4
	pkgsrc-2023Q1-base:1.7
	pkgsrc-2022Q4:1.7.0.2
	pkgsrc-2022Q4-base:1.7
	pkgsrc-2022Q3:1.6.0.4
	pkgsrc-2022Q3-base:1.6
	pkgsrc-2022Q2:1.6.0.2
	pkgsrc-2022Q2-base:1.6
	pkgsrc-2022Q1:1.5.0.2
	pkgsrc-2022Q1-base:1.5
	pkgsrc-2021Q4:1.4.0.2
	pkgsrc-2021Q4-base:1.4
	pkgsrc-2021Q3:1.3.0.2
	pkgsrc-2021Q3-base:1.3
	pkgsrc-2021Q2:1.1.0.2
	pkgsrc-2021Q2-base:1.1;
locks; strict;
comment	@# @;


1.11
date	2024.11.29.15.17.46;	author bacon;	state Exp;
branches;
next	1.10;
commitid	8kivLWWq44n5pyzF;

1.10
date	2023.10.28.20.37.17;	author bacon;	state Exp;
branches;
next	1.9;
commitid	ROdeT5We4gd0YqKE;

1.9
date	2023.08.12.14.52.46;	author bacon;	state Exp;
branches;
next	1.8;
commitid	YPjXZ7n87JU9xvAE;

1.8
date	2023.06.14.18.48.54;	author bacon;	state Exp;
branches;
next	1.7;
commitid	v7HAu74Lt0rMJWsE;

1.7
date	2022.12.11.21.16.46;	author bacon;	state Exp;
branches;
next	1.6;
commitid	JOeAZAyIbAdavb5E;

1.6
date	2022.06.11.19.52.58;	author bacon;	state Exp;
branches;
next	1.5;
commitid	ykXvb2K11X93VEHD;

1.5
date	2022.03.15.21.11.58;	author bacon;	state Exp;
branches;
next	1.4;
commitid	H8aT4NGTlgvAbmwD;

1.4
date	2021.12.14.19.08.11;	author bacon;	state Exp;
branches;
next	1.3;
commitid	ydXVZZI1qOtkqEkD;

1.3
date	2021.09.03.01.57.56;	author bacon;	state Exp;
branches;
next	1.2;
commitid	ZqhnrHSPhZUf0s7D;

1.2
date	2021.08.28.18.40.29;	author bacon;	state Exp;
branches;
next	1.1;
commitid	Td7w5l1EU4VgKL6D;

1.1
date	2021.06.15.13.54.14;	author bacon;	state Exp;
branches;
next	;
commitid	fJ7beCb9J3NCxeXC;


desc
@@


1.11
log
@biology/peak-classifier: Update to 0.1.4.21

Fix build for non-default PKGMANDIR
Add --version flag
@
text
@@@comment $NetBSD$
bin/extract-genes
bin/feature-view
bin/filter-overlaps
bin/peak-classifier
libexec/extract-genes.awk
man/man1/extract-genes.1
man/man1/feature-view.1
man/man1/filter-overlaps.1
man/man1/peak-classifier.1
@


1.10
log
@biology/peak-classifier: Update to 0.1.4.13

Updates for new libxtend API
@
text
@@


1.9
log
@biology/peak-classifier: Update to 0.1.4.11

Updates for biolibc GFF3 API changes
@
text
@@


1.8
log
@biology/peak-classifier: Update to 0.1.4.8

Updates for libxtend API
Minor fixes
@
text
@@


1.7
log
@biology/peak-classifier: Update to 0.1.4-5

Update for biolibc API changes
@
text
@@


1.6
log
@biology/peak-classifier: Update to 0.1.4

Update for bl_gff_t API streamlining
https://github.com/auerlab/peak-classifier/releases
@
text
@@


1.5
log
@biology/peak-classifier: Update to 0.1.3

Minor update for biolibc 0.2.2 API changes
@
text
@@


1.4
log
@biology/peak-classifier: Update to 0.1.2

Mainly updates for evolving libxtend and biolibc APIs
A few minor fixes and enhancements
@
text
@@


1.3
log
@biology/peak-classifier: Update to 0.1.1.21

Fix regression: Replace BL_BED_SET_STRAND() macro with
bl_bed_set_strand(), which performs sanity checks
@
text
@@


1.2
log
@biology/peak-classifier: Update to 0.1.1.20

Updates for libxtend and biolibc API changes
@
text
@@


1.1
log
@biology/peak-classifier: import peak-classifier-0.1.1

Classify ChIP/ATAC-Seq peaks based on features provided in a GFF
Peaks are provided in a BED file sorted by chromosome and position. The GFF
must be sorted by chromosome and position, with gene-level features separated
by ### tags and each gene organized into subfeatures such as transcripts and
exons.  This is the default for common data sources.
@
text
@@