head 1.4; access; symbols pkgsrc-2023Q4:1.4.0.2 pkgsrc-2023Q4-base:1.4 pkgsrc-2023Q3:1.3.0.14 pkgsrc-2023Q3-base:1.3 pkgsrc-2023Q2:1.3.0.12 pkgsrc-2023Q2-base:1.3 pkgsrc-2023Q1:1.3.0.10 pkgsrc-2023Q1-base:1.3 pkgsrc-2022Q4:1.3.0.8 pkgsrc-2022Q4-base:1.3 pkgsrc-2022Q3:1.3.0.6 pkgsrc-2022Q3-base:1.3 pkgsrc-2022Q2:1.3.0.4 pkgsrc-2022Q2-base:1.3 pkgsrc-2022Q1:1.3.0.2 pkgsrc-2022Q1-base:1.3 pkgsrc-2021Q4:1.2.0.12 pkgsrc-2021Q4-base:1.2 pkgsrc-2021Q3:1.2.0.10 pkgsrc-2021Q3-base:1.2 pkgsrc-2021Q2:1.2.0.8 pkgsrc-2021Q2-base:1.2 pkgsrc-2021Q1:1.2.0.6 pkgsrc-2021Q1-base:1.2 pkgsrc-2020Q4:1.2.0.4 pkgsrc-2020Q4-base:1.2 pkgsrc-2020Q3:1.2.0.2 pkgsrc-2020Q3-base:1.2 pkgsrc-2020Q2:1.1.0.14 pkgsrc-2020Q2-base:1.1 pkgsrc-2020Q1:1.1.0.10 pkgsrc-2020Q1-base:1.1 pkgsrc-2019Q4:1.1.0.12 pkgsrc-2019Q4-base:1.1 pkgsrc-2019Q3:1.1.0.8 pkgsrc-2019Q3-base:1.1 pkgsrc-2019Q2:1.1.0.6 pkgsrc-2019Q2-base:1.1 pkgsrc-2019Q1:1.1.0.4 pkgsrc-2019Q1-base:1.1 pkgsrc-2018Q4:1.1.0.2 pkgsrc-2018Q4-base:1.1; locks; strict; comment @# @; 1.4 date 2023.11.04.14.35.07; author bacon; state Exp; branches; next 1.3; commitid 1gIhLVph3euAJiLE; 1.3 date 2022.02.27.01.57.27; author bacon; state Exp; branches; next 1.2; commitid 8xLjjdzaBviZicuD; 1.2 date 2020.07.23.19.22.00; author bacon; state Exp; branches; next 1.1; commitid 7lxNBAD1O5kvQehC; 1.1 date 2018.12.21.19.00.56; author bacon; state Exp; branches; next ; commitid fPsZiwOysvbpoH4B; desc @@ 1.4 log @biology/kallisto: Update to 0.50.1 Update kallisto index version to 13 A few other new features Changes: https://github.com/pachterlab/kallisto/releases @ text @@@comment $NetBSD$ bin/kallisto bin/kallisto-test share/kallisto/test/README.md share/kallisto/test/Snakefile share/kallisto/test/chrom.txt share/kallisto/test/reads_1.fastq.gz share/kallisto/test/reads_2.fastq.gz share/kallisto/test/sc_reads_1.fastq.gz share/kallisto/test/sc_reads_2.fastq.gz share/kallisto/test/transcripts.fasta.gz share/kallisto/test/transcripts.gtf.gz @ 1.3 log @biology/kallisto: Update to 0.48.0 Long awaited bug fix release Also unbundled htslib Changes: https://github.com/pachterlab/kallisto/tags @ text @@ 1.2 log @biology/kallisto: Upgrade to 0.46.1 Minor enhancements since 0.45 0.46.2 is available, but has serious regressions. Reverted to bundled htslib 1.4.1, since kallisto source contains modified htslib files that are incompatible with the current 1.10.2 package. @ text @d9 2 @ 1.1 log @biology/kallisto: import kallisto-0.45.0 Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. @ text @@