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comment	@# @;


1.1
date	2024.12.04.13.38.32;	author bacon;	state Exp;
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commitid	FS8uGc4pFDD6HbAF;


desc
@@


1.1
log
@biology/fasttree: Phylogenetic trees from alignments

FastTree infers approximately-maximum-likelihood phylogenetic trees
from alignments of nucleotide or protein sequences. FastTree can
handle alignments with up to a million of sequences in a reasonable
amount of time and memory.
@
text
@
BIN =		FastTree
SRC =		FastTree*.c
CC ?=		gcc
CFLAGS ?=	-O3
CFLAGS +=	-DOPENMP -fopenmp

MKDIR ?=	mkdir
INSTALL ?=	install
PREFIX ?=	/usr/local

.PHONY:	all install clean

all:	${BIN}

${BIN}: ${SRC} Makefile
	${CC} ${CFLAGS} ${SRC} -o ${BIN} ${LDFLAGS} -lm

install: ${BIN}
	${MKDIR} -p ${DESTDIR}${PREFIX}/bin
	${INSTALL} -s -c ${BIN} ${DESTDIR}${PREFIX}/bin

clean:
	${RM} -f ${BIN}
@